Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04861 ATGCGTCCACCAATGAAGAAAATTGATTACAAAGTTGGAGATAAAGTAGAAGTATGCAGCAAAGAAGAAGGATTCATGGGTTCATACTATGAAGCCACAATTGTTTCATGTCTTGATAACGGAAAATACGTGATTCGTTACAAGAATCTTCTTAAAGATGATGAGTCTGGACTTCTCACCGAAACACTTCTTCCAAAAGATCTTCGTCCATCACCGCCACGTGTTCGTAATCCTTCTAAGTTCCAACTCAACCAAAAAGTGGATGTTTTTGATAACGATGGTTGGTGGGTAGGGAAAATCATAAGCGAGAAGATCCTCATGGAAAAGAGTTATTACTATACTGTGTATTTCAAATATACCGATCAAACTGTTTACTACACTTGTGATCAAATTAGGGTTCATCATGAGTTAATGTTTAGTGGAGAGTGGATGATGGAAGCTTAA 444 0.3739 MRPPMKKIDYKVGDKVEVCSKEEGFMGSYYEATIVSCLDNGKYVIRYKNLLKDDESGLLTETLLPKDLRPSPPRVRNPSKFQLNQKVDVFDNDGWWVGKIISEKILMEKSYYYTVYFKYTDQTVYYTCDQIRVHHELMFSGEWMMEA 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04861 147 CDD Tudor_Agenet_AtDUF_rpt1_3 10 73 - -
Trre9g04861 147 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 9 137 - -
Trre9g04861 147 Gene3D - 4 67 - -
Trre9g04861 147 SMART agenet_At_2 8 76 IPR014002 -
Trre9g04861 147 SMART agenet_At_2 79 139 IPR014002 -
Trre9g04861 147 Pfam Agenet domain 13 73 IPR008395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04861 Trre-Chr9 55057892 55058335 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04861 20 109 PHD Transcription Factor Family AT5G58610 35.455 1.59e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04861 - - tpra:123923978 222.631