Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04848 ATGGCTAATGAGAATCATAATCCTTTCTATCATCACAACCACCATGATGATGAACTCAATCACTCAAACTTTTCATTCTCACAAAACTTTCAAGGATTTGATCCTTCTTCTCATAGTACAAGTTTCACTGACTACTTACATGGTTCCATGGATTATAACACACTCTCAAAAGCCTTTGATTTGTCTTGTTCATCATCTGAAATGAATATTTCTTCCATTGATGATAACAATACAAAGAAATCTAGTGTAGGAATTAGTGAGACACTAAATTCCTCAGAATCATCATCATCTAATGAAGCTATTGTACAAGAAGATTCAACCAAAAGCAACAAGAAAGATAAGCAACCAAAATTAGAGTGTGAAGATGTAGATGATGAAAAGTCCAAGAAAGAGAAAGAGAATAAGGCTAAAAAGAAAGAGAAAAAGCCAAAAGAGCCAAGATTTGCCTTCTTGACTAAAAGTGAGATTGATCATCTTGAAGATGGATATAGATGGAGAAAATATGGACAGAAAGCAGTCAAGAATAGTCCATATCCAAGGAGCTATTATAGATGTACAAGTCAAAAGTGCATTGTGAAGAAAAGGGTGGAAAGATCATATCAAGATCCAACAATTGTGATGACAACATATGAAGGACAACACAATCATCATTGTCCAGCAACACTAAGAGGTAATGCTTCCTCCATGTTGTTTTCATCACCATCTCTCTTTGCTCCAACTTCAATTGGATTGGAACAAAAATTGCACCAAGATTTTCTTGCTCAGTTTCTTCCAAGTTACACCCAACAAAGTGATACTCAACAACAAATGTTCCACCAAAATCTTCCACAAATATTACCTCATCATCAACAACAGCAGCAGCAACAGCAACAGTTTCAAATTCATCATGACTATGGTTTGTTGCAAGATCTACTACCATCATCATTTCCAGGAAAACAAGAGCCATGA 948 0.3544 MANENHNPFYHHNHHDDELNHSNFSFSQNFQGFDPSSHSTSFTDYLHGSMDYNTLSKAFDLSCSSSEMNISSIDDNNTKKSSVGISETLNSSESSSSNEAIVQEDSTKSNKKDKQPKLECEDVDDEKSKKEKENKAKKKEKKPKEPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCIVKKRVERSYQDPTIVMTTYEGQHNHHCPATLRGNASSMLFSSPSLFAPTSIGLEQKLHQDFLAQFLPSYTQQSDTQQQMFHQNLPQILPHHQQQQQQQQQFQIHHDYGLLQDLLPSSFPGKQEP 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04848 315 Gene3D WRKY domain 144 220 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g04848 315 Pfam WRKY DNA -binding domain 160 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g04848 315 ProSiteProfiles WRKY domain profile. 154 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g04848 315 MobiDBLite consensus disorder prediction 70 104 - -
Trre9g04848 315 MobiDBLite consensus disorder prediction 70 146 - -
Trre9g04848 315 MobiDBLite consensus disorder prediction 105 146 - -
Trre9g04848 315 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 65 279 IPR044810 GO:0003700
Trre9g04848 315 Coils Coil 120 140 - -
Trre9g04848 315 FunFam WRKY transcription factor 57 145 219 - -
Trre9g04848 315 SUPERFAMILY WRKY DNA-binding domain 152 219 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g04848 315 SMART WRKY_cls 159 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04848 Trre-Chr9 54997269 54999544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04848 27 315 WRKY Transcription Factor Family AT4G18170 43.537 4.80e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre9g04848 WRKY 1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04848 - - aprc:113847247 339.347