Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04847 ATGTTTGCTCCTGATGATAATAATTCGGACAAGATATCGATTCATATGAGGACGAGTAAACACAGTGATCCTGATAGTGCAAGTCATTGCAGTTCAGTTTATCATCATGAGAGAGGATTGAGTGCGCTTTCATGGGAAGAAGGCAGCTCTGGGAATTATAAGAAGCAGTCTACACTGTCATATGGAGGAGGGCCAATGGCTTCTCCCTCTCCTTTGATTGGTTTGCCGGAATTTTCTCATCTTGGTTGGGGCCACTGGTTTACTCTTAGAGATCTTGAACAAGCAACCAATTGTTTCTCGACTGAGAACGTTCTCGGTGAGGGTGGATATGGAGTTGTTTACAAGGGAAGACTGATCAACGGAACCGAGGTTGCAGTGAAGAAACTTCTTAACAACTTGGGACAAGCAGAGAGAGAATTCAGGGTTGAAGTGGAGGCTATAGGCCATGTTAGACATAAGCATCTTGTGCGCCTGCTTGGATATTGCGTAGAAGGAGTTCACAGGCTGCTGGTGTACGAATATGTGAACAATGGTAACTTAGAACAATGGTTACATGGCGACAAGTACCAACTTGGGACACTTACCTGGGAGGCCCGCATGAAAGTTATACTCGGCACTGCCAAAGCGCTTGCTTACTTACATGAAGCGATTGAGCCAAAAGTTATTCACCGAGATATAAAGTCTAGCAACATATTGATCGATAATGAGTTCAATGCAAAGGTTTCTGATTTCGGTTTGGCCAAACTTTTGGAATCAGGAGAAAGTTACATAACTACTAGAGTAATGGGAACCTTTGGTTACGTAGCACCCGAATACGCCAACAGCGGTTTGTTAAATGAGAAGAGTGACATTTACAGCTTCGGTGTCCTCCTGCTGGAAGCGGTTACCGGCAGGGACCCTGTAGACTATGCGCGTCCTTCTAATGAGGTTAATCTTGTTGAATGGCTCAAGATGATGGTGGGAGCAAGGAGAGCCGAGGAAGTTGTGGACTCAAGCATTGAAGTTAAACCATCTGGACGTGCTTTAAAACGTTCCCTTCTGGTTGCACTTAGGTGTATCGATCCTGATGCTGACAAAAGGCCTAAAATGGGTCAAGTTGTTAGGATGCTTGAAGCCGATGAATATCCATTTCGAGAGGATCGAAGGAATAGAAAGAGCATGACTACCAGCTTCGAAATTGAAACGGTGAAGGAAATTTCTGATCAAGGTGATGTTGAAAAGGCGGAGCATGTGCCAGAAACAACTCAAGGAAAGGATTGA 1260 0.4452 MFAPDDNNSDKISIHMRTSKHSDPDSASHCSSVYHHERGLSALSWEEGSSGNYKKQSTLSYGGGPMASPSPLIGLPEFSHLGWGHWFTLRDLEQATNCFSTENVLGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEREFRVEVEAIGHVRHKHLVRLLGYCVEGVHRLLVYEYVNNGNLEQWLHGDKYQLGTLTWEARMKVILGTAKALAYLHEAIEPKVIHRDIKSSNILIDNEFNAKVSDFGLAKLLESGESYITTRVMGTFGYVAPEYANSGLLNEKSDIYSFGVLLLEAVTGRDPVDYARPSNEVNLVEWLKMMVGARRAEEVVDSSIEVKPSGRALKRSLLVALRCIDPDADKRPKMGQVVRMLEADEYPFREDRRNRKSMTTSFEIETVKEISDQGDVEKAEHVPETTQGKD 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04847 419 Pfam Protein kinase domain 100 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04847 419 Coils Coil 119 139 - -
Trre9g04847 419 ProSiteProfiles Protein kinase domain profile. 99 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04847 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Trre9g04847 419 Gene3D Transferase(Phosphotransferase) domain 1 175 389 - -
Trre9g04847 419 SUPERFAMILY Protein kinase-like (PK-like) 79 372 IPR011009 -
Trre9g04847 419 ProSitePatterns Protein kinases ATP-binding region signature. 105 128 IPR017441 GO:0005524
Trre9g04847 419 Gene3D Phosphorylase Kinase; domain 1 81 174 - -
Trre9g04847 419 MobiDBLite consensus disorder prediction 381 419 - -
Trre9g04847 419 FunFam Putative receptor-like serine/threonine-protein kinase 175 385 - -
Trre9g04847 419 SMART serkin_6 99 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04847 419 PANTHER OS01G0323000 PROTEIN 22 393 - -
Trre9g04847 419 FunFam Putative receptor-like protein kinase 81 174 - -
Trre9g04847 419 CDD STKc_IRAK 105 371 - -
Trre9g04847 419 MobiDBLite consensus disorder prediction 397 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04847 Trre-Chr9 54983413 54985682 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04847 76 373 Trihelix Transcription Factor Family AT1G70460 49.505 2.88e-93 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Trre9g04847 Pkinase 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04847 - - gmx:100798916 699.893