Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04816 ATGGATATTGTGACCAAATTAGATAACTTTGATGACAAGAAAGAAGATGAAGTTGCACTTCCTGGATTTAGATTCCACCCAACAGATGAAGAGCTTGTTGGATTTTATCTACAGCGAAAAATAGATAAGAAGCCTCTTCGAATCGAACTTATCAAACAGATTGATATCTACAAATATGATCCATGGGATTTACCAACTAGTACTATGGGAGAGAAAGAATGTTATTTCTTTTGTCTAAGAGGAAGAAAATACAGAAACAGCATAAGGCCTAATAGAGTAACAGGATCTGGATTTTGGAAAGCCACAGGAATTGATAAACCTATATACTCATCAAGTGTTAAAGAATCATCACATGAATGTATTGGACTTAAGAAATCATTGGTTTATTATCGTGGAAGTGCTGGAAAAGGTACTAAAACTGATTGGATGATGCATGAATTTCGTCTTCCACCTAAAGGAAAAACTAGCAATAATCAGTTACATAATCAAAGCAATGATGTTCAAGAAGCTGAAGTGTGGACACTATGCAGAATATTCAAACGAATTCCATCATACAAAAAATACACACCAAATTTGAAAAAAGACATAGAAGAAACAGCAGCATTCACAAGTAACTCTTCAAGTTCCAAAACATGCAGCTTAGAATCTGATAACAGCAAACCATACTTGACTTTCACAAACTCACCACTTGTTGATGAAACCAAACCATTTATTAATGGACATGTTGACCAAAGGATTAACCCCTCATTTCTAAGTCATCAGTTAGGCAATGTAGTTCAAACTCCATCAAACTTGTCTCAATCAAGTTTTTGGAATGATCAGAATGTTGTTGATGAAGCATTTACAAATGAGAATTGGGATGATCTTAGATCTGTTATTCAGTTTACCTTTGACCCATCAAAGGTTTATGATTGTAAAGACTTTAATTAG 930 0.3419 MDIVTKLDNFDDKKEDEVALPGFRFHPTDEELVGFYLQRKIDKKPLRIELIKQIDIYKYDPWDLPTSTMGEKECYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDKPIYSSSVKESSHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPKGKTSNNQLHNQSNDVQEAEVWTLCRIFKRIPSYKKYTPNLKKDIEETAAFTSNSSSSKTCSLESDNSKPYLTFTNSPLVDETKPFINGHVDQRINPSFLSHQLGNVVQTPSNLSQSSFWNDQNVVDEAFTNENWDDLRSVIQFTFDPSKVYDCKDFN 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04816 309 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 239 - -
Trre9g04816 309 FunFam NAC domain-containing protein 35 28 184 - -
Trre9g04816 309 ProSiteProfiles NAC domain profile. 19 181 IPR003441 GO:0003677|GO:0006355
Trre9g04816 309 Pfam No apical meristem (NAM) protein 21 149 IPR003441 GO:0003677|GO:0006355
Trre9g04816 309 Gene3D NAC domain 28 184 IPR036093 GO:0003677|GO:0006355
Trre9g04816 309 SUPERFAMILY NAC domain 18 180 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04816 Trre-Chr9 54832819 54835703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04816 13 181 NAC Transcription Factor Family AT5G39820 59.890 1.86e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre9g04816 NAM 2.6e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04816 - - gmx:100795553 437.958