Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04798 ATGGATAATTCAAATGAAGCATCATCATCATTGAGTTTTGTATCATCTCCTCATTTATCAAATGGTTCAAGTAATAATCAGAACTTATCTTCCTCAACCAACAATGAACATGTAGCAAATATTGAAATTGTGAGTTTGAATAAGCTAAGTGGAAGCCTTGAGAAGTTATTATTAAGTGATGTTGATTATGATTATTGTGATGCTGAGATTGTTGTTGAAGAAATTCCGGTTGGTATTCATCGATGTATACTCGCTTCGCGGAGTCAGTATTTTCATGAGCTTTTTAAGAAAGAGAAAGATGGAGAGGTGAAGGAAGGAAAGGGAAAAGGAAAGCCAAGGTATCATATGAAAGATTTGGTGGCTTATGGTAGTGTTGGATATGAAGCTTTCATTGTTTTCTTGCATTATTTGTATACTGGAAAGTTAAAGGCTCCACCAACAGAAGTTACAACATGTGTTGATGAAGCTTGTATTCATGATGCGTGTCGTCCTGCTATCGATTATGCTTTGGAACTTATGTATGCTTCTTCCAATTTTAAGATGAAAGAGCTGATTTTACTTTTTCAGAGGTTTCTCCTAAACTTTGTTGACAAGGCTCTTGTAGAAGATGTCCTTCCTATTCTTATGGCTGCACATCACTGCACCCTAGACCAGCTTCTCTCTCCTTGCATTCAGAGAGTAGCAAGGTCTGACATGGATATTATATCTTTGGAAAGAGAACTTCCTCATGAAGTTGTGACCGAAATCAAATCACTCCGAGTCCAATCTCTTCCGGAATCCTCTCCCGATGCAATGGAAGTGGAACCTGTGAATGTTAATGTGAATGATAAGAGTGTCAGGAAAATCCTTAAAGCATTGGACTCTGATGATGTGGAGTTACTGAAGCTTCTTTTAGATGAATCTAGTGTGACTCTTGACGATGCTTGTGCACTACACTATGCCTGTGCACATTGTGATTCTAAGGTTGTTCAAGAAGTTCTTACTCTAGGATTAGCTGATATTCTTCTTAAGAATCCCCGTGGATACACAGTTCTTCATGTTGCCGCAAGACGAAAGGATCCATCCATTTTGGTTGCACTGCTGAAGAAAGGGGCCTGTGCATCAGAAACAACTCTCGATGGACAAACTGCTCTTTCGATTTGTCAGAGATTGACGAGGCGAAAGGATTATCATGAGAAAACAGTGCAGGGGAAGGAGTCTCACAAGGATAGGCTTTGTGTTGATGTACTTGAAAGAGAGATGAGAAGAAATTCTATGTCAGTGAACATGGAAGTTTTGTCACAGTTAACTGCCGATGACTTGCACATGAGACTAGATTACCTTGAAAATAGAGTTGCATTTGCTAAGTTGTTCTTTCCTTCTGAGGCTAAGGTAGCCATAGAAAATGCTGAGGCAGATTCAACATCACTGTATGCAACTTCACCTCTTTTAAAAGGCAACATAAAAGAAGTCGATCTAAATGAAACTCCTTCTGTTAGAACAAGAAAACTTCAATTAAGATTACAGTCCCTTGTAAAAACAGTTGAGAATGGCAGGCGCTTTTTTCCGCATTGTTCAGAGGTGCTTGATAAGTTTCTGGAGGATGATATGCCGGATGTTTTCGTCCTAGAGAAAGGCACTGAAGAAGAGCAAAGAACAAAGAAAGCGCGGTTCATGGAACTTAAAGATGAGGTGCAGAAGGCCTTTCACAAAGATATGGCCGAAAATAACCATTCAGGTTTTCAATCTTCATTGTCTTCTACATCATCGACAACTCGTAGGGAAAGTCTTAACCATAAAATGAGAAGAAAATGA 1794 0.3913 MDNSNEASSSLSFVSSPHLSNGSSNNQNLSSSTNNEHVANIEIVSLNKLSGSLEKLLLSDVDYDYCDAEIVVEEIPVGIHRCILASRSQYFHELFKKEKDGEVKEGKGKGKPRYHMKDLVAYGSVGYEAFIVFLHYLYTGKLKAPPTEVTTCVDEACIHDACRPAIDYALELMYASSNFKMKELILLFQRFLLNFVDKALVEDVLPILMAAHHCTLDQLLSPCIQRVARSDMDIISLERELPHEVVTEIKSLRVQSLPESSPDAMEVEPVNVNVNDKSVRKILKALDSDDVELLKLLLDESSVTLDDACALHYACAHCDSKVVQEVLTLGLADILLKNPRGYTVLHVAARRKDPSILVALLKKGACASETTLDGQTALSICQRLTRRKDYHEKTVQGKESHKDRLCVDVLEREMRRNSMSVNMEVLSQLTADDLHMRLDYLENRVAFAKLFFPSEAKVAIENAEADSTSLYATSPLLKGNIKEVDLNETPSVRTRKLQLRLQSLVKTVENGRRFFPHCSEVLDKFLEDDMPDVFVLEKGTEEEQRTKKARFMELKDEVQKAFHKDMAENNHSGFQSSLSSTSSTTRRESLNHKMRRK 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04798 597 SUPERFAMILY POZ domain 59 194 IPR011333 -
Trre9g04798 597 Pfam NPR1/NIM1 like defence protein C terminal 382 581 IPR021094 -
Trre9g04798 597 Pfam Ankyrin repeats (3 copies) 288 365 IPR002110 GO:0005515
Trre9g04798 597 CDD BTB_POZ_NPR_plant 47 196 - -
Trre9g04798 597 Gene3D Potassium Channel Kv1.1; Chain A 29 228 IPR011333 -
Trre9g04798 597 ProSiteProfiles BTB domain profile. 66 146 IPR000210 GO:0005515
Trre9g04798 597 SUPERFAMILY Ankyrin repeat 281 383 IPR036770 -
Trre9g04798 597 Pfam BTB/POZ domain 64 182 IPR000210 GO:0005515
Trre9g04798 597 FunFam Regulatory protein NPR3 39 228 - -
Trre9g04798 597 MobiDBLite consensus disorder prediction 1 32 - -
Trre9g04798 597 ProSiteProfiles Ankyrin repeat region circular profile. 340 365 - -
Trre9g04798 597 Pfam Domain of unknown function (DUF3420) 231 282 IPR024228 -
Trre9g04798 597 MobiDBLite consensus disorder prediction 569 587 - -
Trre9g04798 597 SMART BTB_4 66 196 IPR000210 GO:0005515
Trre9g04798 597 PANTHER REGULATORY PROTEIN NPR3 13 591 IPR044292 GO:0009862|GO:2000022|GO:2000031
Trre9g04798 597 SMART ANK_2a 340 369 IPR002110 GO:0005515
Trre9g04798 597 SMART ANK_2a 306 336 IPR002110 GO:0005515
Trre9g04798 597 MobiDBLite consensus disorder prediction 564 597 - -
Trre9g04798 597 FunFam BTB/POZ domain and ankyrin repeat-containing protein NPR1 243 404 - -
Trre9g04798 597 ProSiteProfiles Ankyrin repeat profile. 340 365 IPR002110 GO:0005515
Trre9g04798 597 Gene3D - 273 414 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04798 Trre-Chr9 54654183 54657033 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trre9g04798 NPR1_like_C 2e-82 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04798 K14508 - gmx:100816582 827.78