Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04779 ATGATTACCGCAATTCTCCGAAGAGCTTCTTCAACTCTCACAAAGCGCGCCATCCCCGCCGCCGAAGCTCTCATTTCCACCACCGCCGCCACCGGTGAACTCCGACAACTCTCCGTCCTCACAGCAAGATCTTTCCACTCAAAATCACAACCTTTGCTATTTCGTGCCTCTTTGTCTTCTCGTGCTGGTTATGCTGCTGAAGCTTTTCCATACGAAGAACCTTCGAAAGCGAATAGTGATGATGGACTTGAGATAAAAAAGCTTGGAATTTCTCAGGATATCGTTGCTGCTTTGGAAACGAAAGGAATCACAAAGCTTTTTCCCATTCAGAGGGCTGTGCTGGAACCTGCTATGCAAGGTCGCGATATGATCGGTCGTGCTAGAACAGGAACCGGAAAAACTCTTGCTTTTGGGATACCCATCATGGATAAAATCATTCAGTTTAATGCTAAACATGGGCGAGGAAAGGATCCTCTGGCCTTGGTTTTGGCTCCGACTAGAGAACTTGCAAAGCAGGTTGAGAAAGAATTCTATGAGGCGGCGCCTAATTTGGATACTATCTGTGTTTATGGGGGTACACCCATTTCTCAACAGATGAGGCAGCTTGATTATGGTGTTGATATTGCTGTTGGAACGCCCGGACGAATTATTGATCTTCTAAATAGAGGTGCTCTGAATTTGAAGGATGTTCAATTTGTTATTCTCGATGAAGCTGATCAGATGCTTCAAGTAGGGTTTCAGGAGGATGTGGAGAAGATCTTGGAGAGGTTGCCTGCCAAGAGACAAACTCTTATGTTCTCAGCAACAATGCCAACTTGGATAAAGCAGTTAACACGAAATTACCTAAAAGATCCCCTAACTATTGATCTTGTTGGAGATTCCGATCAGAAGCTAGCAGATGGAATTTCACTGTATTCAGTTGCATCTGATGCGTATGTTAAAGCAGGAATTCTTGTTCCTCTGATAAAAGAACATGCAAATGGTGGAAAATGTATTGTTTTCACTCAAACAAAACGTGATGCTGATCGAATATCACACGGAATGTCAAGAAGTATTCCATGTGAGGCCTTGCATGGAGATATATCACAAGCTCAGAGGGAAAGAACTCTTGCTGGATTCAGGGAAGGCCATTTTAATGTTTTAGTGGCAACTGATGTTGCTTCACGTGGGCTCGATATACCTAATGTTGATCTTGTAATTCATTATGAGCTTCCCAATAATTCAGAGATATTTGTTCATCGATCTGGACGAACAGGTCGTGCTGGTAAGAAAGGAACCGCTATTCTAATTTATACAGATGGCCAATCCAGGACTCTTAAGACTATTGAGCGTGATGTAGGCTGCAGATTTACCGAGTTACCAAAGATTGCCGTTGATAGTGCATCAGTGGGTGCATTTGGTAGCATGGGTGGTGGGCGATTTGGTGGTTCAAGGGGTGGATTTGGTGATTCAGGCTTTAGCCGTGGTCCTGGATCTTATGGAGGTTCAAGGGGTGGGTTTGGTGATTCAGGCTTTAACCGTGGTCCTGCATCTAACCGTTCTGGGGGCTACGGTAATTCTGGTGAAAGGTTTGGCAACTCGTCTGGTGAAAATAGATATGGCGGATCAAGCTCCGGTCGTTTCGGTTCCTTTGGTTCAGGTACTTCAGGAAATAGATCCGGAGGATCACCCAGTGGATTTAAGTTTAGCGGACAAGGTGGTTCCGATCGTGCAGGTAGTTTTGGGGATTTTGTGTCAGGTAAAACCAGCGGATTTGGTGGTTTTGGCGATCGCCGTGGCAGGGATTAG 1788 0.4508 MITAILRRASSTLTKRAIPAAEALISTTAATGELRQLSVLTARSFHSKSQPLLFRASLSSRAGYAAEAFPYEEPSKANSDDGLEIKKLGISQDIVAALETKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQFNAKHGRGKDPLALVLAPTRELAKQVEKEFYEAAPNLDTICVYGGTPISQQMRQLDYGVDIAVGTPGRIIDLLNRGALNLKDVQFVILDEADQMLQVGFQEDVEKILERLPAKRQTLMFSATMPTWIKQLTRNYLKDPLTIDLVGDSDQKLADGISLYSVASDAYVKAGILVPLIKEHANGGKCIVFTQTKRDADRISHGMSRSIPCEALHGDISQAQRERTLAGFREGHFNVLVATDVASRGLDIPNVDLVIHYELPNNSEIFVHRSGRTGRAGKKGTAILIYTDGQSRTLKTIERDVGCRFTELPKIAVDSASVGAFGSMGGGRFGGSRGGFGDSGFSRGPGSYGGSRGGFGDSGFNRGPASNRSGGYGNSGERFGNSSGENRYGGSSSGRFGSFGSGTSGNRSGGSPSGFKFSGQGGSDRAGSFGDFVSGKTSGFGGFGDRRGRD 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04779 595 Pfam DEAD/DEAH box helicase 107 276 IPR011545 GO:0003676|GO:0005524
Trre9g04779 595 Pfam Helicase conserved C-terminal domain 316 422 IPR001650 -
Trre9g04779 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 443 IPR027417 -
Trre9g04779 595 CDD SF2_C_DEAD 314 431 - -
Trre9g04779 595 Gene3D - 84 292 IPR027417 -
Trre9g04779 595 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 73 464 - -
Trre9g04779 595 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 317 461 IPR001650 -
Trre9g04779 595 SMART helicmild6 342 422 IPR001650 -
Trre9g04779 595 MobiDBLite consensus disorder prediction 481 595 - -
Trre9g04779 595 Gene3D - 311 462 IPR027417 -
Trre9g04779 595 MobiDBLite consensus disorder prediction 507 563 - -
Trre9g04779 595 SMART ultradead3 102 305 IPR014001 -
Trre9g04779 595 FunFam ATP-dependent RNA helicase RhlE 75 291 - -
Trre9g04779 595 CDD DEADc 94 289 - -
Trre9g04779 595 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 114 288 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04779 Trre-Chr9 54489437 54493367 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04779 81 459 Eukaryotic Initiation Factors Gene Family AT3G19760 32.383 8.34e-67 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04779 - - tpra:123920937 933.71