Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04778 ATGGATTCTCCTACTTCCACTTTTGTTCTCTATACCCTCTTCCTTTTGTGTCTCAAAACTACTCTTTCTTCTTCTTCATCATCATCACTTCCTATGTCTTTGAAAACACAAGCTTCTATCTTAGTTTCTCTCAAACAAGATTTTGAACCAAACACTTCCTTAAAAACATGGAATATCTCTAACTACATGTCCCTTTGTTCTTGGTATGGTATTCAATGTGACACAAACAATACTTCTATTGTGTCACTAGACATATCAAACTTGAACATTTCAGGTACTTTTTCACCTTCCATTACAAAACTATCCAACTTAAGATTCCTCAACATATCAAACAACTTATTCAATGGAAATCTAAGTTGGAATTTCTCTCATTTCAAAGATCTTGAAGTTTTTGATGCTTACAACAATGAGTTCAATTGTTCACTACCTATTGATATCACTAAGTTACCTAAGCTCAAATACTTGAATCTTGGAGGAAATTTTTTCAATGGTGAAATTCCTTCAAGTTATGGAAACATGATTCAGCTTAACTATTTATCTCTTGCAGGTAATGATTTGAGAGGTTTCATACCTTATGAACTTGGAAATCTTACTAATCTCACACACCTTTTGTTAGGATATTACAATGTGTTTGATGGTGGAATTCCATCTCATTTTGGTAATCTTGTTAATTTAGTTCATCTTGATCTTGCAAATTGTGGTTTGAAAGGTTCAATTCCTAATGAGTTAGGAAAACTTTACAAACTAGACACACTTTTCTTGCAAACCAATCAACTTAGTGGTTCAATTCCTTCACAATTAGGTAACTTGAGTAGTTTGAAATCTCTTGATATGTCAAACAATGAGTTAATTGGAAACATACCTAATGAGTTTTCAAATCTTCATGAACTCACACTCTTGAACTTGTTCATCAATAAGTTATATGGTGAAATTCCATCTTTTGTTTCTGAGTTACCAAATTTAGAAGTGTTGAAGCTTTGGCATAATAACTTTACAGGTTCTATTCCTTCAAAGTTAGGACAAAATGGTAAATTGAGTGAGCTTGATTTATCAACAAATAAACTCACTGGTTTAGTACCTAAATCTTTATGCATTGGAAAAAAGCTTAAGATTTTAATCTTGCTTAACAATTTTCTGTTTGGTTCTTTGCCTAATGAACTTGGTGAATGTTACACACTTCAAAGAGTTCGTTTAGGACAAAACTATTTAACCGGTTCGATACCAAAAGGTTTTCTTTATTTGCCTCAACTTTCACTTCTTGAACTTCAAAACAATTATCTTAGTGGTTTTCTTCCACCACAAGAAATCACAAACACAAACAGTTCTAAACTCGGAGAGATGAATCTTTCGAACAATCGTTTATCTGGTTCTCTACCTAGTTCTATTGGAAACTTTCCAAATTTGCAGATTCTGCTTCTTCATGGAAATAGATTCTCAGGTGAAATTCCTCAAGATATAGGAAAGTTGAAGAACATTCTTAGACTAGATATGAGTTTCAACAACTTTTCAGGAGAAATTCCTATTGAGATAGGTGAATGTTCTTTGCTTACCTATTTAGATTTGAGTCAAAATCAATTATCAGGTCCTATTCCAATTCAGCTTTCTCAAATTCACATACTTAACTATCTTAATGTCTCATGGAACAACCTAAACCAAACACTTCCTAAGGAACTTGGTGCTATAAAAGGCTTAACTTCAGCTGATTTCTCTCATAATGACTTATCTGGCTCAATTCCTGAAATAGGCCAATTCTCAATGTTCAATTCTACTTCCTATATCGGTAATCCGAAGTTATGTGGATATGATTTGAATCCATGCAACCGTTCTTCGTCAACAATGTTCGAATCTCAGGGTAAAAACAACGGTCGTGCAAAACCTGGAGTTCTGGTAAAGTACAAGCTTTTATTTGCATTAGCACTTTTGTTTTGTTCATTGGTTTTCGCAACCATAGCCATAATCAAAAGTCGAAAAGGAATTAGGAGAGACTCGAATTCATGGAAGTTAACAGCATTTCAGAAGATTGACTATGGAAGTGAAGATATCTTAGGTTGTATCAAGGAAAGTAACATCATAGGAAGAGGAGGTGCTGGTGTTGTATATGGGGGTACAATGCCAAATGGAGAAAAAATAGCTGTGAAAAAGTTATTAGGAATTAACAAAGGTTGTTCTTATGATAATGGTTTATCAGCTGAAATAAAAACACTTGGTAGAATAAGGCATAGATACATTGTGAAGTTATTAGCATTTTGTTCAAATAGAGATACAAATTTGCTTGTTTATGAGTATATGACAAAGGGTAGTTTAGGTGAAGTGTTGCATGGTAAAAGAGGGGGGTATCTTGAGTGGGATGTAAGGGTGAAAATAGCAATTGAAGCTGCTAAAGGACTATGTTATTTGCATCATGATTGTTGTCCTATGATTGTTCATAGAGATGTTAAGTCAAATAATATTTTGTTGGATTCTGAGTTTGAAGCTCATGTTGCTGATTTTGGACTTGCTAAGTTCTTGTTGCAAGAGAATAATGGTGGGACTTCTGAATACATGTCTTCTATTGTTGGTTCTTATGGCTACATTGCTCCAGAATATGCATACACATTGAAGGTGGATGAGAAAAGTGATGTATATAGTTTTGGAGTGGTGCTACTAGAACTACTAACAGGTAGAAGGCCAGTGGGAGATTTTGGTGAAGAAGGAATGGATATTGTTCAATGGACAAAGTTGCAAACTGATTTGAACAAAGAAAAAGTTGTGAAGATTCTTGATAAGAGATTACATCACAATATTCCTTTAGATGAAGCAATGCAGTTATTCTTTGTGGCTATGTTATGTGTTCAAGAACAAAGTGTGGAAAGACCAACTATGAGAGAAGTTGTTGAAATGCTAGTACAAGCAAAGCAACCAAATATATTTCAAATGTAG 2919 0.3395 MDSPTSTFVLYTLFLLCLKTTLSSSSSSSLPMSLKTQASILVSLKQDFEPNTSLKTWNISNYMSLCSWYGIQCDTNNTSIVSLDISNLNISGTFSPSITKLSNLRFLNISNNLFNGNLSWNFSHFKDLEVFDAYNNEFNCSLPIDITKLPKLKYLNLGGNFFNGEIPSSYGNMIQLNYLSLAGNDLRGFIPYELGNLTNLTHLLLGYYNVFDGGIPSHFGNLVNLVHLDLANCGLKGSIPNELGKLYKLDTLFLQTNQLSGSIPSQLGNLSSLKSLDMSNNELIGNIPNEFSNLHELTLLNLFINKLYGEIPSFVSELPNLEVLKLWHNNFTGSIPSKLGQNGKLSELDLSTNKLTGLVPKSLCIGKKLKILILLNNFLFGSLPNELGECYTLQRVRLGQNYLTGSIPKGFLYLPQLSLLELQNNYLSGFLPPQEITNTNSSKLGEMNLSNNRLSGSLPSSIGNFPNLQILLLHGNRFSGEIPQDIGKLKNILRLDMSFNNFSGEIPIEIGECSLLTYLDLSQNQLSGPIPIQLSQIHILNYLNVSWNNLNQTLPKELGAIKGLTSADFSHNDLSGSIPEIGQFSMFNSTSYIGNPKLCGYDLNPCNRSSSTMFESQGKNNGRAKPGVLVKYKLLFALALLFCSLVFATIAIIKSRKGIRRDSNSWKLTAFQKIDYGSEDILGCIKESNIIGRGGAGVVYGGTMPNGEKIAVKKLLGINKGCSYDNGLSAEIKTLGRIRHRYIVKLLAFCSNRDTNLLVYEYMTKGSLGEVLHGKRGGYLEWDVRVKIAIEAAKGLCYLHHDCCPMIVHRDVKSNNILLDSEFEAHVADFGLAKFLLQENNGGTSEYMSSIVGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELLTGRRPVGDFGEEGMDIVQWTKLQTDLNKEKVVKILDKRLHHNIPLDEAMQLFFVAMLCVQEQSVERPTMREVVEMLVQAKQPNIFQM 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04778 972 SUPERFAMILY L domain-like 366 606 - -
Trre9g04778 972 FunFam Leucine-rich repeat receptor-like protein kinase 34 192 - -
Trre9g04778 972 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 210 315 - -
Trre9g04778 972 Gene3D Phosphorylase Kinase; domain 1 680 762 - -
Trre9g04778 972 SUPERFAMILY Protein kinase-like (PK-like) 682 962 IPR011009 -
Trre9g04778 972 Gene3D Transferase(Phosphotransferase) domain 1 763 970 - -
Trre9g04778 972 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 322 610 - -
Trre9g04778 972 Gene3D Ribonuclease Inhibitor 316 614 IPR032675 -
Trre9g04778 972 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 654 762 - -
Trre9g04778 972 SUPERFAMILY RNI-like 82 432 - -
Trre9g04778 972 ProSiteProfiles Protein kinase domain profile. 685 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04778 972 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Trre9g04778 972 Gene3D Ribonuclease Inhibitor 34 315 IPR032675 -
Trre9g04778 972 Pfam Leucine Rich Repeat 224 246 IPR001611 GO:0005515
Trre9g04778 972 Pfam Leucine Rich Repeat 272 294 IPR001611 GO:0005515
Trre9g04778 972 Pfam Leucine Rich Repeat 151 169 IPR001611 GO:0005515
Trre9g04778 972 SMART serkin_6 685 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04778 972 SMART LRR_typ_2 270 293 IPR003591 -
Trre9g04778 972 SMART LRR_typ_2 465 489 IPR003591 -
Trre9g04778 972 SMART LRR_typ_2 318 342 IPR003591 -
Trre9g04778 972 SMART LRR_typ_2 414 438 IPR003591 -
Trre9g04778 972 SMART LRR_typ_2 149 173 IPR003591 -
Trre9g04778 972 SMART LRR_typ_2 222 246 IPR003591 -
Trre9g04778 972 ProSitePatterns Serine/Threonine protein kinases active-site signature. 807 819 IPR008271 GO:0004672|GO:0006468
Trre9g04778 972 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 285 963 - -
Trre9g04778 972 Pfam Protein kinase domain 687 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04778 972 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 763 972 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04778 Trre-Chr9 54469242 54473534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04778 22 963 Receptor kinase-like Gene Family AT5G65700 55.498 0.0 1052
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre9g04778 Pkinase 3.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04778 - - gmx:100816158 1437.17