Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04777 ATGGCTTTCTTTAGGAACTTCGTAAATGATACAGTCTCGCATGGTGTCATGGAAGATAAAGGCCTAGGACAGGATGCTAATAATACCAATAGATCAATAGGTAATGAATGTACTGATGCAACTTCTAGCGAGAAAGAATTCGATATGAACTTGGAGGCACAATATGAGAGTGATGGTGGACCAGATGCTGCCTGTAGACTGCAAAATGAGGGAACGGCCGATGATGGAGATGCTATGAGAGAATCCAACTTACAGGCCGCTGGTAGTAAAGCATCTACGGTTGGAAGGTGGGGCTCAACATTTTGGAAGGACTGCCAACCAATGTGTCCTCAAAATGGTTCCGAATCTGGGAAGGAATCAAAAAGTGGATCAGACTATAGAAATCCAGGGGGATCCGAAGATAATTCATTGGATGGAGAAACAGGAAGGCTAGACTCAGAAGATGATGATGGACAAAAGGAGGCAGGTAAAGGCCGAAGAAGCCACTCTGATGTTCCTGCCGAAGAGATGTTGTCTGATGAATATTATGAGCAGGATGGGGAAGATCAAAGTGACTCATTGCATTATAATGGGATTCACAAGCCTACTGGACGGAATTCATGGCCTCAACAGATGTCTAAATCTACGAAAAGAACCGTGCGTAGGAAATCTAGGATTTCAGATGACGATGGTGATGGTGATGGTGATTATGAAGAAGAAGATGAAGTAGATGAAGATGATCCCGATGATGCAGATTTTGAGCCTGCCGCAAGTAGCCATACCTTAACCAAGGATAAAGATTGGGAAGGTGTAGGATCGGATGAAAATGATGACAGTGATGAAAGTCTAGATGTCTCTGATGATGACGAATCTTTCTATACTAAAAAACCCAAGGGAAGGCAACAAGGTAAGGTTAGAAAAAGTATAAAATCTACCAGAGATCGCAAAACAGGTGTTGCATCTAGCAGACAAAGAAGATTCAAACCATCTTTTGAAGATAATGAGTCAACAACAGATGATTCTGCCAGTGATAGTGATGACGATTTCAAAAGAAGAAGAAAGAGAAGTTTCAATGTCCGCAAGAATAACAGCCGGTTTTCTGCAACCAACAGTTTTTCTACCCACAGCAGTGAGGTCCGCACTTCTACCAGGGCGGTTAGGAAGATATCATACGTTGAAAGTGATGAAAGTGAAGAGGCTGATGAAGGGAAGAAGAAAAAGTCTCAAAAGGAGGAAATTGAAGAGGACGATGGTGACTCTATTGAAAAGGTGCTTTGGCATCAGCTGAAGGGCACAGCTGAAGATGCCCAAAGGAATAATAGATCAACAGAGCCTGCTTTAACGAGTCACTTGTTTGATTCTGAATTTGATTGGAATGAGATTGAATTTTTAATAAAATGGAAGGGGCAATCTCATTTGCACTGTCAATGGAAGTCTTTTCCCGAGCTACAAAATCTCAGTGGCTTCAAGAAGGTTTTGAATTATACAAAGAAAATAATGGAGGACATCAGGTACCGGAAGACAATCTCAAGGGAGGAGATTGAGGTCCATGATGTGAGTAAGGAGATGGATTTAGAAATTATCAGGCAGAATAGTCAGGTGGAAAGAATAATTGCAGATAGGATCAGTAAAGATGATTCTGGTGATGTTATCCCAGAATACCTGGTCAAGTGGCAAGGACTATCTTATGCTGAAGTGACATGGGAAAAGGACATTGATATCGCCTTTGCTCAACATTCAATTGACGAATATAAGGCTCGAGAGGCTGCAATGTCAGTTCAAGGAAAGGTGGTGGATTCCCAGCGTAAGAAGAGCAAAGCAAGTTTGCGGAAGCTTGAGGAACAACCTGAATGGTTGAAGGGTGGAAAGCTCCGTGATTATCAACTTGAGGGTTTGAATTTTCTTGTTAACAGCTGGAGAAATGATACAAATGTCATTTTAGCCGATGAAATGGGTCTTGGGAAAACTGTTCAGTCAGTATCAATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTGCCGTTGTCTACTTTATCAAACTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATTGTATACGTTGGTACTCGAGCAAGTCGAGAGGTTTGTCAACAGTATGAATTTTATAATGACAAAAAGCCTGGTAAACCAATAAAATTCAATGCACTGTTGACTACATATGAAGTAATTTTGAAAGATAAGGCAGTTCTCTCCAAGATCAAATGGAATTATCTGATGGTAGATGAAGCTCATAGACTAAAAAATAGTGAGGCGCAGTTGTATACATCACTTTTAGAATTTAGCACCAAGAATAAGTTGCTCATCACTGGGACTCCTTTACAAAATAGTGTTGAAGAGCTATGGGCTTTGCTCCACTTTCTTGATCCTAACAAGTTCAACAGCAAGGATGATTTTGTTCAAAACTATAAAAATCTGAGTTCTTTCCATGAGAATGAGCTTGCAAATCTTCATATGGAATTGAGGCCACACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCTTTACCCCCAAAAATTGAGCGTATCCTTAGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTATAAGTGGATTTTGGAACGCAACTTTCAAAATTTAAACAAAGGAGTTCGCGGCAATCAGGTTTCTCTTCTAAATATTGTGGTGGAATTGAAAAAATGTTGCAACCATCCCTTCCTATTTGAAAGTGCTGATCATGGTTATGGTGGGGACTCTGGAGGCAGTGACAACAGTAAACTTGAGAGAATTGTCTTTAGCAGTGGCAAGCTTGTGATACTTGATAAGCTTCTTGTTAGATTGCATGAGACCAAGCATCGTGTTCTGATTTTCTCTCAGATGGTCAGGATGTTGGATATATTGGCACAGTATTTGTCACTTCGAGGGTTTCAATTTCAAAGACTTGATGGCAGTACAAAATCTGAGCTGCGACAGCAGGCAATGGAGCATTTCAATGCACCTGGTAGTGATGATTTTTGCTTCCTTCTTTCAACACGAGCAGGAGGTCTAGGTATCAACCTTGCCACAGCAGACACAGTCATTATATTTGATTCTGACTGGAATCCTCAAAATGACCTCCAGGCAATGAGTAGAGCTCATAGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTGTGACAAGCAAAAGTGTCGAAGAAGATATTCTGGAGCGTGCCAAGAAGAAGATGGTTCTGGACCACTTGGTGATTCAAAAACTGAATGCAGAAGGTAGGCTGGAGAAGAAAGAAGCCAAAAAAGGAGGAAGTCTTTTTGATAAAAATGAACTGTCTGCAATCTTACGATTTGGAGCTGAAGAGCTTTTCAAGGAAGAAAGAAATGATGAAGAAAGCAAGAAAAGACTCTTAAGTATGAATATAGATGAGATTCTTGAAAGAGCTGAGAAAGTTGAAGAGAAGATAGATGAAGAAGAACAAGGCAATGAGTTATTAAGTGCATTTAAGGTTGCCAATTTTTGCAATGATGAAGATGATGCAAGTTTCTGGAGTCGTTGGATAAAGCCTAATGCTGCATTCCAAGCAGAGGAAGCTCTTGCTCCACGTTCTGCAAGAAATATTAAAAGCTATGCAGAGGCTGATCCATCTGAAAGGATTAATAAAAGAAAAAAGAAGGAACCTGAACAACCTGAACGAGTTCAGAAACGCCGCAAAGCAGAGCATTCGGCTCCTGCAGTACCATTGGTTGATGGAGCCTCTGTCCAAGTGAGAAGTTGGTCATATGGGAATTTATCTAAAAGAGATGCACTCCGTTTTTCTCGTGCAGTTATGAAATTCGGCAATGAAAACCAAATCGACTTAATTGCTGCTGACGTTGGTGGTGCAGTTGTGGCAGCTCCACCTGAAGCGCAGATTGAACTTTTCAATGCTCTAATTGATGGTTGTTCAGAAGCTGCGGAAATAGAAAATTTGGATATAAAGGGGCCTGTGCTAGACTTTTTTGGTGTCCCAGTGAAAGCAAATGATCTACTTACCCGTGTACAAGAACTTCAGCTCCTAGCAAAGCGCATTAGCCGGTATCAAGATCCCATTGCACAATTCCGTGTTTTATCATATCTGAAACCTTCAAATTGGTCGAAAGGTTGTGGGTGGAATCAAATTGATGATGCCAGATTGCTTCTTGGAATACATTACCATGGATTTGGTAATTGGGAAATGATTAGATTAGACGAAAGACTTGGCCTCATGAAAAAAATAGCACCTGTAGAACTCCAAAACCATGAAACTTTCTTGCCACGAGCTCCAAATTTGAGAGACCGTGCTAATGCCCTTCTGGAGCAAGAACTCGTTGTTCTTGGGGTAAAAAATGTGAATAGCAGAGTTGCACGGAAGCCCTCCAAGAAAGAGAAAGATCATATGAATATCTCACTATTGCGTGGACAGGAGAAGAAGAAAAAACCGGGTTCTGTTAATGTCCAAATGAGGAAGGATAGGTTTCAGAAACCCCAAAAGGTTGAACCTATTGTAAAAGAGGAAGGGGAAATGTCCGACAATGAAGAAGTATATGAGCAGTTTAAGGAAGTAAAATGGATGGAATGGTGTCAAGATGTGATGGTTGAAGAAATGAAAACTTTGAAACGTCTTCACAGATTGCAGACAACTAGTGCTAATCTTCCTAAGGAAAAGGTTCTTTCAAAGATACGCAACTATTTACAACTTCTTGGGCGAAGGATTGATCAAATTGTGTTTGAAAATGAAGCGGAACCCTATAAGCAAGATAGAATGACTGTACGGCTGTGGAAATATGTATCCACCTTTTCCCATCTTTCAGGGGAGAGGCTTCATCAAATATATTCCAAACTTAAACAGGAACAAAATGATGAGGCCGGGGTTGGTCCCTCTGCTTCATTTAACAGAAATGGAAACCCATTCCATCGCCATATGGAGAGGCAAAGAGGATTAAAAAATATGGCTAACTATCAAATGTCAGAACCTGATAATAATAACACAGGAAAATCTGAGGCATGGAAACGGAGAAGAAGATCTGAAAGTGATGATCATTTCCTGGGTCAACCACCACCACCTCAAAGAATCACCAGTAATGGAGTCCGGATTACTGACCCTAACTCACTTGGGATCCTTGGTGCTGGACCATCTGACAAACGGTTTGTTAGTGAGAAACCTTTTAGGACGCAACCCGGTGGTGTTCCTTAA 5205 0.4079 MAFFRNFVNDTVSHGVMEDKGLGQDANNTNRSIGNECTDATSSEKEFDMNLEAQYESDGGPDAACRLQNEGTADDGDAMRESNLQAAGSKASTVGRWGSTFWKDCQPMCPQNGSESGKESKSGSDYRNPGGSEDNSLDGETGRLDSEDDDGQKEAGKGRRSHSDVPAEEMLSDEYYEQDGEDQSDSLHYNGIHKPTGRNSWPQQMSKSTKRTVRRKSRISDDDGDGDGDYEEEDEVDEDDPDDADFEPAASSHTLTKDKDWEGVGSDENDDSDESLDVSDDDESFYTKKPKGRQQGKVRKSIKSTRDRKTGVASSRQRRFKPSFEDNESTTDDSASDSDDDFKRRRKRSFNVRKNNSRFSATNSFSTHSSEVRTSTRAVRKISYVESDESEEADEGKKKKSQKEEIEEDDGDSIEKVLWHQLKGTAEDAQRNNRSTEPALTSHLFDSEFDWNEIEFLIKWKGQSHLHCQWKSFPELQNLSGFKKVLNYTKKIMEDIRYRKTISREEIEVHDVSKEMDLEIIRQNSQVERIIADRISKDDSGDVIPEYLVKWQGLSYAEVTWEKDIDIAFAQHSIDEYKAREAAMSVQGKVVDSQRKKSKASLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGTRASREVCQQYEFYNDKKPGKPIKFNALLTTYEVILKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTSLLEFSTKNKLLITGTPLQNSVEELWALLHFLDPNKFNSKDDFVQNYKNLSSFHENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFQNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGGSDNSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAQYLSLRGFQFQRLDGSTKSELRQQAMEHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGSLFDKNELSAILRFGAEELFKEERNDEESKKRLLSMNIDEILERAEKVEEKIDEEEQGNELLSAFKVANFCNDEDDASFWSRWIKPNAAFQAEEALAPRSARNIKSYAEADPSERINKRKKKEPEQPERVQKRRKAEHSAPAVPLVDGASVQVRSWSYGNLSKRDALRFSRAVMKFGNENQIDLIAADVGGAVVAAPPEAQIELFNALIDGCSEAAEIENLDIKGPVLDFFGVPVKANDLLTRVQELQLLAKRISRYQDPIAQFRVLSYLKPSNWSKGCGWNQIDDARLLLGIHYHGFGNWEMIRLDERLGLMKKIAPVELQNHETFLPRAPNLRDRANALLEQELVVLGVKNVNSRVARKPSKKEKDHMNISLLRGQEKKKKPGSVNVQMRKDRFQKPQKVEPIVKEEGEMSDNEEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQLLGRRIDQIVFENEAEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLKQEQNDEAGVGPSASFNRNGNPFHRHMERQRGLKNMANYQMSEPDNNNTGKSEAWKRRRRSESDDHFLGQPPPPQRITSNGVRITDPNSLGILGAGPSDKRFVSEKPFRTQPGGVP 1734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04777 1734 Gene3D - 398 525 - -
Trre9g04777 1734 SMART chromo_7 523 582 IPR000953 -
Trre9g04777 1734 SMART chromo_7 410 493 IPR000953 -
Trre9g04777 1734 ProSiteProfiles Chromo and chromo shadow domain profile. 412 500 IPR000953 -
Trre9g04777 1734 MobiDBLite consensus disorder prediction 138 169 - -
Trre9g04777 1734 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 605 838 IPR027417 -
Trre9g04777 1734 FunFam protein CHROMATIN REMODELING 5 isoform X2 527 579 - -
Trre9g04777 1734 MobiDBLite consensus disorder prediction 19 43 - -
Trre9g04777 1734 MobiDBLite consensus disorder prediction 23 40 - -
Trre9g04777 1734 MobiDBLite consensus disorder prediction 1206 1241 - -
Trre9g04777 1734 CDD SF2_C_SNF 923 1058 - -
Trre9g04777 1734 ProSiteProfiles Chromo and chromo shadow domain profile. 525 589 IPR000953 -
Trre9g04777 1734 Gene3D - 1344 1448 - -
Trre9g04777 1734 MobiDBLite consensus disorder prediction 354 381 - -
Trre9g04777 1734 MobiDBLite consensus disorder prediction 1656 1734 - -
Trre9g04777 1734 MobiDBLite consensus disorder prediction 1668 1684 - -
Trre9g04777 1734 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 848 1078 - -
Trre9g04777 1734 Gene3D - 848 1078 IPR027417 -
Trre9g04777 1734 MobiDBLite consensus disorder prediction 382 411 - -
Trre9g04777 1734 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 841 1122 IPR027417 -
Trre9g04777 1734 SUPERFAMILY Chromo domain-like 504 580 IPR016197 -
Trre9g04777 1734 MobiDBLite consensus disorder prediction 55 411 - -
Trre9g04777 1734 SMART DUF4208_2 1513 1618 IPR025260 -
Trre9g04777 1734 MobiDBLite consensus disorder prediction 1208 1240 - -
Trre9g04777 1734 SUPERFAMILY Chromo domain-like 409 492 IPR016197 -
Trre9g04777 1734 Pfam SNF2-related domain 636 905 IPR000330 GO:0005524|GO:0140658
Trre9g04777 1734 Pfam Chromo (CHRromatin Organisation MOdifier) domain 526 580 IPR023780 -
Trre9g04777 1734 Pfam Helicase conserved C-terminal domain 934 1047 IPR001650 -
Trre9g04777 1734 Coils Coil 1131 1158 - -
Trre9g04777 1734 MobiDBLite consensus disorder prediction 305 328 - -
Trre9g04777 1734 Gene3D - 608 847 IPR038718 -
Trre9g04777 1734 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 937 1088 IPR001650 -
Trre9g04777 1734 Pfam Domain of unknown function (DUF4208) 1525 1617 IPR025260 -
Trre9g04777 1734 SMART ultradead3 613 812 IPR014001 -
Trre9g04777 1734 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 629 801 IPR014001 -
Trre9g04777 1734 SMART helicmild6 963 1047 IPR001650 -
Trre9g04777 1734 Gene3D - 527 579 - -
Trre9g04777 1734 MobiDBLite consensus disorder prediction 1622 1642 - -
Trre9g04777 1734 MobiDBLite consensus disorder prediction 224 245 - -
Trre9g04777 1734 Coils Coil 1077 1097 - -
Trre9g04777 1734 MobiDBLite consensus disorder prediction 105 135 - -
Trre9g04777 1734 FunFam Photoperiod-independent early flowering 1 587 861 - -
Trre9g04777 1734 CDD CD1_tandem 410 490 - -
Trre9g04777 1734 MobiDBLite consensus disorder prediction 265 280 - -
Trre9g04777 1734 CDD CD2_tandem 523 579 - -
Trre9g04777 1734 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 200 1657 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04777 Trre-Chr9 54442284 54461848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04777 639 1074 RAD5 or RAD16-like Gene Family AT1G02670 26.337 6.39e-37 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre9g04777 SNF2_N 3e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04777 K11367 - gmx:100792398 2912.48