Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04769 ATGGAAGAATCAAGTGAGTTGCAACCAGAAGAAAATAAAGCCTCTGCAGAGAAAAATCCGAAAAGAAAGCTCAAAACACCTGCACAGCTTAAGGGCTTGGAGCAATTTTATACTGAGCACAAATATCCGACAGAGGAATTGAAATTAGCGATTGCGGAGGAGTTAGAGTTGACAGAAAAGCAAGTATCTGGATGGTTTTGCCACCGAAGATTAAAAGATAAAAGATTGTTGAAGGAAGAAGCAAATGCTGCTGCTAATGGACGACAAGATCGTTCAAGCGGTGTCATCCAGGATCGTGGCAGTGGACTCGGGCAAGATTCATGTGGAAGCAGTAAACATGGTGATTATAAGTATCTGGATCCTAAAGAGGTTGAGAGCCATGGTCTCTACAATCGGGATTTGTCAGTTGCAGATATGACCTATGGACATCGGTTGTATCCTCAAGGCCAAGATCCATATGAGACCGAGCCATCTAGATATCTAGCACATAGTAAAGCTCTTCCACCCTTAAATCCCAAGGGTACAGTTAACATGGGATATAAACCATCGGGATATTTGAAAGTGAAGGGTGAGATAGAGCATGCTGCTATAACCGCTGTTAAGAAGCAATTAGGAAGGAACTATCGGGAAGATGGTCCACTACTTGGTGTAGAATTTGATCCCCTTCCTCCAGGGGCATTTGAATGCCAAACTGAAGATCCAGTTCACGAACCATACAGTATTGCTGATCCTGCTCTTCTGAATTCTCCAGAAATCTCCACAGTAAAAAGGCGGCCCGGTCTTAGCTCTAGATATGATTCGTATTATACTAAACATGGTTCCCAAGATACTCATACAGAAGGAGATGACTTTGGTTCCTTGCAAGATTCTGACATTCATGATAAACAAGATAAGAAAACTTTCCATGGTGCAAAACACAGACAAACTTTTCAGAGCAATGCCACTCGTTTTCCTGGAAGGAACTCTCCCTTGGATTTGTATGAAGACTCTACTGGGGAAGCTGCTTATAATATCGCTAAGAATCATAGGAAGGACATCAAGCGCGGTGTTGAGGGGATGAGATCTGATTCTGCTTCTAACCATAGTGATCACTATGAAGAAAACCTTGCAGTTAAACATGCAGACTTTGACTATGATAACATCAATCCAAAGAATGTGCAAAGGAGTGTTCCTGCAGACTTTCTGCAACATGACTATGATAAAATCAAGCCAAAGAATGCGCAAAGGAGTGAACCTGTAAAGTCTAAGCCTTCAAATTCAATCCGTAATTCTCGAGGTTCTGTGGATACTGAAGAAAGAGGGCTATCTTCTAGGATGGCTAAGGAAGAGATGTTTAAGGGGGACAAGAAGGCAAAGAAGCAATATCGCGACACAAGTGGAGCAGGGATGCTTTCAAATGAAACTATGGTTGCAAAACGACTTAAATCCAATTCGTTTCAACCATATATTATGAAACAATTGCCTGTTGCTGATATAGAACCAAAGAAAAATCAGAGATCTGCTGCAGAGATGCCGTCTAGCTTTAGCGAGGATGAAACTGCCGATACCAGTTCCTCATTGGATTGA 1566 0.4195 MEESSELQPEENKASAEKNPKRKLKTPAQLKGLEQFYTEHKYPTEELKLAIAEELELTEKQVSGWFCHRRLKDKRLLKEEANAAANGRQDRSSGVIQDRGSGLGQDSCGSSKHGDYKYLDPKEVESHGLYNRDLSVADMTYGHRLYPQGQDPYETEPSRYLAHSKALPPLNPKGTVNMGYKPSGYLKVKGEIEHAAITAVKKQLGRNYREDGPLLGVEFDPLPPGAFECQTEDPVHEPYSIADPALLNSPEISTVKRRPGLSSRYDSYYTKHGSQDTHTEGDDFGSLQDSDIHDKQDKKTFHGAKHRQTFQSNATRFPGRNSPLDLYEDSTGEAAYNIAKNHRKDIKRGVEGMRSDSASNHSDHYEENLAVKHADFDYDNINPKNVQRSVPADFLQHDYDKIKPKNAQRSEPVKSKPSNSIRNSRGSVDTEERGLSSRMAKEEMFKGDKKAKKQYRDTSGAGMLSNETMVAKRLKSNSFQPYIMKQLPVADIEPKKNQRSAAEMPSSFSEDETADTSSSLD 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04769 521 CDD homeodomain 21 75 IPR001356 GO:0003677
Trre9g04769 521 MobiDBLite consensus disorder prediction 411 425 - -
Trre9g04769 521 MobiDBLite consensus disorder prediction 500 521 - -
Trre9g04769 521 MobiDBLite consensus disorder prediction 86 108 - -
Trre9g04769 521 Gene3D - 12 85 - -
Trre9g04769 521 SMART HOX_1 18 80 IPR001356 GO:0003677
Trre9g04769 521 MobiDBLite consensus disorder prediction 426 456 - -
Trre9g04769 521 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Trre9g04769 521 Pfam Homeodomain 21 75 IPR001356 GO:0003677
Trre9g04769 521 MobiDBLite consensus disorder prediction 401 464 - -
Trre9g04769 521 MobiDBLite consensus disorder prediction 490 521 - -
Trre9g04769 521 MobiDBLite consensus disorder prediction 271 304 - -
Trre9g04769 521 MobiDBLite consensus disorder prediction 7 28 - -
Trre9g04769 521 MobiDBLite consensus disorder prediction 250 322 - -
Trre9g04769 521 MobiDBLite consensus disorder prediction 82 114 - -
Trre9g04769 521 MobiDBLite consensus disorder prediction 1 28 - -
Trre9g04769 521 SUPERFAMILY Homeodomain-like 16 78 IPR009057 -
Trre9g04769 521 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 144 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04769 Trre-Chr9 54374201 54379425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04769 3 521 Homeobox Transcription Factor Family AT4G03250 38.559 2.73e-84 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre9g04769 Homeodomain 7.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04769 - - gmx:100803515 708.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g04769 9 54374201 54379425 Trre9g04769 9 54374201 54379425 ECH
Trre5g01572 5 11422989 11426144 Trre9g04769 9 54374201 54379425 PCT