Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04765 ATGGTTAGGAGATTGCCTTCAGATTCAGGAGCTTTTGCTGATTGGGCAGCAACTTCATCATCAACAGTTCGTGCTGCTGCTCCAGAAGATCTATCACTCGGTTTCAATGCGGGTCCCACCGCCGGAAACGCCGGACCTTCCACCGGACCCACCACCGGAATATGGTCTGGTGGTGGTGGTGGTTCTAGGTCCGTTAATTACGGACCTGAAATGGGTATGTTTGTTGTAGCACCATCTCCTTATCACCCTCATCACCACCATCATAGCCACCATAATAACCACCATGAAGCTATTATCTCCGATCCTCATTCTCTTAACCCCGCCACCGCTCTCGGCGTCGGAGTTATTCCTTTACTTACTGCTTCACCTTGTCTTGAAAATGAAAGACAACAACAAGGAATTCAGTTTTGGCATGAACAACAACAACAACATCAACATCATTCAAATTATTTGAAAAAACATCAAGGTTTTCTTGATCATCATCATATTAATACAAGTCCAACAAATTTAGTTCATCACGGTGGTGGAGGAGGAGGGTTAACTGTTTCTGGAACAAGTAGTGGTGGTGGAACAACTACATGTCAAGATTGTGGAAATCAAGCAAAAAAAGATTGTAGTAATAGAAGGTGTAGAACTTGTTGTAAAAGTAGAGGTTTTGATTGCCCTACTCATGTTAAGAGTACTTGGGTACCTGCTGCTAGAAGAAGAGAACGTCTTGCTTCGGCGGGGACGACAACGGTGGTTGCTGCTGGTGGTTCTAGTGGTTCAACTTCTGGTGCTAAGAAACCTAGACTTATTGCTTCACAAACTACTTCTCATACTTCTACTTCTAATACTACCCCTCCTAGAAGCTTTGACACTACTTCTAGCCATCAAGATGCAGGTTTCAAAGAGTCAATGCCAGGTCAAGTACGTGCACCAGCAGTATTCAAGTGTGTTAGAGTGACATCAGTGGATGATGGAAAAGATGAATATGCATATCAAGCAGTAGTGAAAATTGGTGGCCATGTTTTCAAAGGTTTTCTTTATGATCATGGTGTTGAGAGTAGAGAAGTTTATCCAAACCTTTCTGAGCTTCATTTAGGAGGTGGTGGTGGTAATAATAATAATGGTGGTGCTAATAGAAATGGAGTTTCATCTTCATCACCAATGTTGGATCCTTCTCATGATGTTTATGCAGCAGCTTCAAGTGGTGTTGGAGGATTACTAGGAGGTTCAGCTTATGATAGTAAGGGTTCATCTTTGGTGGTGCTTAGTTAA 1260 0.427 MVRRLPSDSGAFADWAATSSSTVRAAAPEDLSLGFNAGPTAGNAGPSTGPTTGIWSGGGGGSRSVNYGPEMGMFVVAPSPYHPHHHHHSHHNNHHEAIISDPHSLNPATALGVGVIPLLTASPCLENERQQQGIQFWHEQQQQHQHHSNYLKKHQGFLDHHHINTSPTNLVHHGGGGGGLTVSGTSSGGGTTTCQDCGNQAKKDCSNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERLASAGTTTVVAAGGSSGSTSGAKKPRLIASQTTSHTSTSNTTPPRSFDTTSSHQDAGFKESMPGQVRAPAVFKCVRVTSVDDGKDEYAYQAVVKIGGHVFKGFLYDHGVESREVYPNLSELHLGGGGGNNNNGGANRNGVSSSSPMLDPSHDVYAAASSGVGGLLGGSAYDSKGSSLVVLS 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04765 419 MobiDBLite consensus disorder prediction 241 300 - -
Trre9g04765 419 Pfam Domain of unknown function (DUF702) 191 348 - -
Trre9g04765 419 MobiDBLite consensus disorder prediction 246 296 - -
Trre9g04765 419 MobiDBLite consensus disorder prediction 41 59 - -
Trre9g04765 419 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 90 394 IPR007818 GO:0003700|GO:0006355
Trre9g04765 419 MobiDBLite consensus disorder prediction 363 385 - -
Trre9g04765 419 MobiDBLite consensus disorder prediction 37 61 - -
Trre9g04765 419 NCBIfam putative zinc finger domain, LRP1 type 193 235 IPR006510 -
Trre9g04765 419 NCBIfam LRP1 C-terminal domain 300 347 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04765 Trre-Chr9 54308356 54312678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04765 5 392 C2H2 Transcription Factor Family AT5G12330 49.524 2.39e-95 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Trre9g04765 DUF702 5.9e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04765 - - tpra:123922661 577.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g04765 9 54308356 54312678 Trre9g04765 9 54308356 54312678 ECH