Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04747 ATGACAACAATCAGTCTCCGGAAAGGAAACACACGACTCCCACCGGAAGTTAACCGCGTCCTCTACGTCCGCAACCTTCCATTCAACATCACCAGCGAAGAAATGTACGATATATTCGGCAAATACGGTGCAATTCGTCAGATCCGAATCGGAACAAACAAAGACACTCGCGGCACCGCTTTCGTAGTTTACGAAGATATTTACGACGCTAAAACCGCCGTCGATCATCTCTCCGGTTTCAATGTTGCTAATAGGTATCTTATTCAAGTAGTTGATGATTATATTCACAGCTGA 294 0.449 MTTISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIQVVDDYIHS 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04747 97 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 87 IPR000504 GO:0003723
Trre9g04747 97 SUPERFAMILY RNA-binding domain, RBD 18 88 IPR035979 GO:0003676
Trre9g04747 97 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 87 IPR000504 GO:0003723
Trre9g04747 97 Gene3D - 5 92 IPR012677 -
Trre9g04747 97 CDD RRM_SF3B14 17 88 IPR034150 -
Trre9g04747 97 SMART rrm1_1 20 91 IPR000504 GO:0003723
Trre9g04747 97 FunFam Splicing factor 3B, subunit 6 14 93 - -
Trre9g04747 97 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 21 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04747 Trre-Chr9 54190337 54191924 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04747 18 78 Eukaryotic Initiation Factors Gene Family AT4G34110 32.812 4.13e-06 41.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04747 K12833 - csav:115694844 177.948