Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04738 ATGGCTTTCACACTAGAGAGATGTGAAGATAACATGATGTTCACTATGGAATCTCAGAAGTCAGTGCCTGCTCCTTTCTTGACAAAGACATATCAACTTGTTGATGATCCTCTCACTGACCACATTGTATCTTGGAGTGATGATGAAACTACATTTGTTGTTTGGAGACCTTCTGAGTTTGCTAGAGATCTTCTTCCCAATTTTTTCAAGCACAACAACTTCTCAAGCTTTGTTAGGCAACTAAATACCTATGGTTTCAAGAAGGTGGTTGCTGATAGGTGGGAGTTTGCAAATGAATACTTCAAAAAAGGAGCTAAGCATCTATTATGTGAAATCCACAGAAGAAAAACCCCTCAACACTATCAACAACAATACTATGAACAACAATCACCACAAATTCTTCAACAAGATCATGAAAGTATTTGTTGGATTGATTCTCCATTACCATCTCCTAAATCAAACACTGATATCTTAACAGCACTCTCTGAAGACAATCAAAGATTAAGGAGAAAGAATTTCATGCTCTTATCAGAACTCACTCACATGAAGAATCTTTACAATGATATTATATATTTCATTCAAAATCATGTGAGTCCTGCTACACCTTTTGAACAAAGAAGTAACAATAGTTCTATTTTGAAGCTTGTTGAATTGGATTCATCAGCATCTCAATTAGCAAATGATAATAATGTGGTTAAGGATAGTAATAGTTCTTATGTGAAACTCTTTGGTGTTCCTCTTTGTGGTAAAAAGAGAGTGCATCCAAGTAATCTTGATTAA 780 0.35 MAFTLERCEDNMMFTMESQKSVPAPFLTKTYQLVDDPLTDHIVSWSDDETTFVVWRPSEFARDLLPNFFKHNNFSSFVRQLNTYGFKKVVADRWEFANEYFKKGAKHLLCEIHRRKTPQHYQQQYYEQQSPQILQQDHESICWIDSPLPSPKSNTDILTALSEDNQRLRRKNFMLLSELTHMKNLYNDIIYFIQNHVSPATPFEQRSNNSSILKLVELDSSASQLANDNNVVKDSNSSYVKLFGVPLCGKKRVHPSNLD 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04738 259 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre9g04738 259 FunFam Heat stress transcription factor B-4 18 116 - -
Trre9g04738 259 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre9g04738 259 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre9g04738 259 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 209 IPR027725 -
Trre9g04738 259 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre9g04738 259 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre9g04738 259 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre9g04738 259 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Trre9g04738 259 Gene3D - 18 117 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04738 Trre-Chr9 54149538 54151099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04738 10 254 HSF AT1G46264 50.814 1.23e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre9g04738 HSF_DNA-bind 1.7e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04738 K09419 - gmx:100527682 395.201