Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04735 ATGGCAAACAACAATTGTGCTCCCTCCTCTTTCAACCCAAACTCCATGAATGAATCCTCAGAGAACAATCCTGTGAAATCTTACACAGGTAACAAGAGAGGATACATGGTCACAAACAATGACACATTGGTGATGCCAACACAATCACATGCACCACCCTCTACTACTAGACTTGTTGATCCCCCTCAAGAGCCACTTGAGGACATTATCACACCCTCCACCAAAAAACCTAGGGGTAGACCCTTAGGATCTAAGAACAAACCAAAACCACCCCCTAGCCCACTTGTGCAATTTGCTACCTTTGAAATCCCTGCAGGAATGGATATTCCGGGGATTTTAATTAACTATGCTCGGGAAAATAATTTTGGCATAGCAGTTTTGAGTGGTTTTGGGACTATCTCTAGTGTTACGTTACTCGATCCGATATCCTTTACACCAAAGTCCCCCATTGCTGGACCTTTTTATATGACATCTCTAACGGGAACATATGTTAATCCCAATTGTCATAGAATTTCTCCTATATTCATCAATGATCCAATATCTTCATGTTTTTCCATTTTTCTTGCTAGCAATGATGAACATGTGTATGGTGGAATTGTTGGGGGAGAAGTTATTACTGCTGATGTTGTTACTATTACAACCCTTCTTTTTAGGAACCCTGAGATCTATCGAGAAGGATTTGGCAATGGTGGTGGTGGTGTCATCAACAATGTTGGTCTTGTTGCACCTCAACCTAACAACATCAACAACGTTAACGTTGTAGCTGATGTGCCAAATTTCAATGCTGTAGGTGTTGATCCAATTCAGCCAAATCATCACCAAATGCCTCTTCATCATCTTCCTAATGATTATGATGTGATGCAGTGGAATGATTTCACTCACTTTAATAGCTACTAG 897 0.408 MANNNCAPSSFNPNSMNESSENNPVKSYTGNKRGYMVTNNDTLVMPTQSHAPPSTTRLVDPPQEPLEDIITPSTKKPRGRPLGSKNKPKPPPSPLVQFATFEIPAGMDIPGILINYARENNFGIAVLSGFGTISSVTLLDPISFTPKSPIAGPFYMTSLTGTYVNPNCHRISPIFINDPISSCFSIFLASNDEHVYGGIVGGEVITADVVTITTLLFRNPEIYREGFGNGGGGVINNVGLVAPQPNNINNVNVVADVPNFNAVGVDPIQPNHHQMPLHHLPNDYDVMQWNDFTHFNSY 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04735 298 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 43 224 IPR014476 GO:0003680
Trre9g04735 298 MobiDBLite consensus disorder prediction 1 95 - -
Trre9g04735 298 ProSiteProfiles PPC domain profile profile. 92 244 IPR005175 -
Trre9g04735 298 Gene3D - 96 235 - -
Trre9g04735 298 CDD DUF296 101 215 IPR005175 -
Trre9g04735 298 SUPERFAMILY AF0104/ALDC/Ptd012-like 99 224 - -
Trre9g04735 298 MobiDBLite consensus disorder prediction 1 56 - -
Trre9g04735 298 Pfam Plants and Prokaryotes Conserved (PCC) domain 100 215 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04735 Trre-Chr9 54123228 54124124 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04735 75 224 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 34.810 5.48e-19 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04735 - - psat:127121089 184.496