Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04716 ATGAGGAAGAAACTAGATACTCGTTTCCCTGCTGCTAGGATTAAGAAAATTATGCAAACTGATGAAGATGTTGGGAAGATCGCAATGGCTGTGCCTCTTCTAGTTTCAAAAGCACTAGAGCAATTTCTGCAAGATTTGTGCAATAGAACATATGAAATAACACTTATGAAGGGAGCAAAGACCGTGAATGCTTTTCATTTAAAACAGTGCGTACAAACCTTTAGTGTCTTTGATTTTCTAAACGATATTGTGAGCAAGGTTCCTGATTTAGGTGGTTCTATCGCAACTGGTGACGACCAAACTGTCCCGAAGAGGAGGAAAGTTGCGGAAGATGATGATAATGACAGCGACGAGGAGACCAAGAGAAATAAAATGCCAGAACCTGCACAAACCGGTGGAAGAGGAAGGGGTAGAGGAAGAGGAAGGGGTCGTGGCCGTGGCCGTGGAAGTAAAACCGCAGATCATGAGACAAGCTCACATGTCAAGTTTGAAGATGACTCTGATGTATTCACACAAAATGGCAACCACACTCAAAGTAATGAAAGTCCCGAAATTGTGCAAGAATCCGAAGAAGTTAAGCATTGTTCACCAGTCAGAAAACCGGCTGAAGTGTTCGTTCGAAATTTCGATTTAAATATGGATCCGGACGAGGACATGGATTTAATATCCACACCAACTCCTATCCCAACTGGTTCATCTTCAAAATCAATTTCAGAAGAGAAGGTTGATGAATATCCAGGATGGTCCTTGTCTGATATGGAAAAAATGGCCATTGATCCTATTCAACTTGCCAACTTAAATAAAAGGATTGATGAAGATATGGAAGATTATGATGAAGAAGTGTAG 846 0.4113 MRKKLDTRFPAARIKKIMQTDEDVGKIAMAVPLLVSKALEQFLQDLCNRTYEITLMKGAKTVNAFHLKQCVQTFSVFDFLNDIVSKVPDLGGSIATGDDQTVPKRRKVAEDDDNDSDEETKRNKMPEPAQTGGRGRGRGRGRGRGRGRGSKTADHETSSHVKFEDDSDVFTQNGNHTQSNESPEIVQESEEVKHCSPVRKPAEVFVRNFDLNMDPDEDMDLISTPTPIPTGSSSKSISEEKVDEYPGWSLSDMEKMAIDPIQLANLNKRIDEDMEDYDEEV 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04716 281 MobiDBLite consensus disorder prediction 147 169 - -
Trre9g04716 281 FunFam dr1-associated corepressor homolog 1 86 - -
Trre9g04716 281 SUPERFAMILY Histone-fold 3 105 IPR009072 GO:0046982
Trre9g04716 281 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Trre9g04716 281 MobiDBLite consensus disorder prediction 170 185 - -
Trre9g04716 281 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 122 - -
Trre9g04716 281 MobiDBLite consensus disorder prediction 90 197 - -
Trre9g04716 281 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Trre9g04716 281 MobiDBLite consensus disorder prediction 216 243 - -
Trre9g04716 281 MobiDBLite consensus disorder prediction 100 125 - -
Trre9g04716 281 Coils Coil 267 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04716 Trre-Chr9 53960167 53963039 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04716 1 270 CCAAT-HAP5 Transcription Factor Family AT3G12480 46.233 1.42e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Trre9g04716 CBFD_NFYB_HMF 1.2e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04716 K21752 - gmx:100814800 394.43