Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04713 ATGAGGAAGAAACTAGATACTCGTTTCCCTGCTGCTAGGATTAAGAAAATTATGCAAACTGATGAAGATGTTGGGAAGATCGCAATGGCTGTGCCTCTTCTAGTTTCAAAAGCACTAGAGCAATTTCTGCAAGATTTGTGCAATAGAACATATGAAATAACACTTATGAAGGGAGCAAAGACCGTGAATGCTTTTCATTTAAAACAGTGCGTACAAACCTTTAGTGTCTTTGATTTTCTAAACGATATTGTGAGCAAGGTTCCTGATTTAGGTGGTTCTATCGCAACTGGTGACGACCAAACTGTCCCGAAGAGGAGGTTCGTATTTGTGACTTTGTGA 339 0.3953 MRKKLDTRFPAARIKKIMQTDEDVGKIAMAVPLLVSKALEQFLQDLCNRTYEITLMKGAKTVNAFHLKQCVQTFSVFDFLNDIVSKVPDLGGSIATGDDQTVPKRRFVFVTL 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04713 112 FunFam dr1-associated corepressor homolog 1 86 - -
Trre9g04713 112 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Trre9g04713 112 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 92 - -
Trre9g04713 112 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Trre9g04713 112 SUPERFAMILY Histone-fold 3 104 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04713 Trre-Chr9 53935035 53937171 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04713 1 106 CCAAT-HAP5 Transcription Factor Family AT3G12480 69.643 1.50e-52 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Trre9g04713 CBFD_NFYB_HMF 1.7e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04713 K21752 - gmx:100814800 188.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g04713 9 53935035 53937171 Trre9g04713 9 53935035 53937171 ECH