Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04712 ATGAGGAAGAAACTAGATACTCGTTTCCCTGCTGCTAGGATTAAGAAAATTATGCAAACTGATGAAGATGTTGGGAAGATCGCAATGGCTGTGCCTCTTCTAGTTTCAAAAGCACTAGAGCAATTTCTGCAAGATTTGTGCAATAGAACATATGAAATAACACTTATGAAGGGAGCAAAGACCGTGAATGCTTTTCATTTAAAACAGTGCGTACAAACCTTTAGTGTCTTTGATTTTCTAAACGATATTGTGAGCAAGGTTCCTGATTTAGGTGGTTCTATCGCAACTGGTGACGACCAAACTGTCCCGAAGAGGAGGAAAGTTGCGGAAGATGATGACTTAATTGAACCCTCACCTCAGAATCCACCCAATTTTCACTCAATTTTATTTTCTTTTTCTTTCTTAACTACGTTCTCACTTAAATTTTAA 429 0.3776 MRKKLDTRFPAARIKKIMQTDEDVGKIAMAVPLLVSKALEQFLQDLCNRTYEITLMKGAKTVNAFHLKQCVQTFSVFDFLNDIVSKVPDLGGSIATGDDQTVPKRRKVAEDDDLIEPSPQNPPNFHSILFSFSFLTTFSLKF 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04712 142 FunFam dr1-associated corepressor homolog 1 86 - -
Trre9g04712 142 SUPERFAMILY Histone-fold 3 105 IPR009072 GO:0046982
Trre9g04712 142 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Trre9g04712 142 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Trre9g04712 142 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04712 Trre-Chr9 53935035 53937360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04712 1 112 CCAAT-HAP5 Transcription Factor Family AT3G12480 67.797 6.10e-53 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Trre9g04712 CBFD_NFYB_HMF 3.1e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04712 K21752 - gmx:100814800 199.519