Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04709 ATGGGTTGTTTATGTTCCAAAAGTTCAGCTGTAGAAGACAACAATGAAAGTATATCAAAGAAATTGCAATCAAGTACTTCAGAGTTGAATGTTTTGAGGTTGAATTCTTCCAAGAGGGTTGAAGGTGGAGTTAATATGAAAGTGAAAGCTTCATTCAATGAAAAGAAATCCAATGGTTCAGTACACTTGACAGTTCTTGCTATTTCCTTTTTTGAAGGAAGAATGTCAAGTGGAGCAACGCACTGGTGTTATGAATGCAGTCGGCCAATTGTGCTTGAAGGGAGAGACGTCGTTTGCCCTTACTGTGACGATGGATTTGTACAAGAACTTGATGAGATGCGAGGCATTGCACCTCAAAATACCCTTCCGTCACGCTCGGGTGAGCTTCATCAAATGCCTGACTTATTTGATGCTCTACATGCTTTTGTGGGGAATAGAGGTTCTGAAAACAGGTTTGGGCTTATGGATGCTGTTGATAATTTCATGAGGCATAGAATGGCTGGAATGCACCCAAACTTTGATGTTAGAGGGAGGACGAGTTCATCTGTGCCGGTTCCTGAACAGAGTTGGGGTGTTTATAGTTCTGGTCCTTTTTTAGTATTTCATGGCCAAGTTCCTGGATTAAACTTGCCTAATGGAAGCCCGAGAGGTGGTCCAAGGCGTGGTGATTTTGGCGACTACTTTATGGGTTCTGGACTTGAAGAGCTTATTGAACAACTCACCATGAATGATCGGCGTGGTCCACCCCCGGCTGCACGATCTTCAATTGATGCAATGCCTACTATTAGGATCACACAGGCACATCTTCGCTCCGATTCACATTGTCCAGTTTGTAAAGAAAAATTTGAACTTGGTTCTGAAGCCAGAGAGATGCCATGTGACCATATTTACCATTCCGATTGTATTGTTCCTTGGTTGGTTGAGCATAACTCGTGTCCTGTTTGCCGTGTTGAGTTGCCACCACACGGACAAGTCAGTTCTCGTACAAGCAGTCGAAACAACAACAGTGGAAATAGTAGCTCAAGGGGCAGGGAGAGTGACCGTCCAAACAATGGAAGGAGAAATCCATTTTCGTTTCTGTGGCCATTCCGTTCTTCAAGTTCAAACAATAATCAATATTCTGAGACTGGAGGAAGCAGCTCTTCAACCAATGCTGACCAGAATAACGGAACAAGTTATCATGGATGGCATTACGATAACTAA 1203 0.4331 MGCLCSKSSAVEDNNESISKKLQSSTSELNVLRLNSSKRVEGGVNMKVKASFNEKKSNGSVHLTVLAISFFEGRMSSGATHWCYECSRPIVLEGRDVVCPYCDDGFVQELDEMRGIAPQNTLPSRSGELHQMPDLFDALHAFVGNRGSENRFGLMDAVDNFMRHRMAGMHPNFDVRGRTSSSVPVPEQSWGVYSSGPFLVFHGQVPGLNLPNGSPRGGPRRGDFGDYFMGSGLEELIEQLTMNDRRGPPPAARSSIDAMPTIRITQAHLRSDSHCPVCKEKFELGSEAREMPCDHIYHSDCIVPWLVEHNSCPVCRVELPPHGQVSSRTSSRNNNSGNSSSRGRESDRPNNGRRNPFSFLWPFRSSSSNNNQYSETGGSSSSTNADQNNGTSYHGWHYDN 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04709 400 CDD RING-H2_RNF126-like 275 316 - -
Trre9g04709 400 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 193 320 - -
Trre9g04709 400 SMART ring_2 275 315 IPR001841 -
Trre9g04709 400 Pfam Ring finger domain 274 316 IPR001841 -
Trre9g04709 400 ProSiteProfiles Zinc finger RING-type profile. 275 316 IPR001841 -
Trre9g04709 400 MobiDBLite consensus disorder prediction 360 400 - -
Trre9g04709 400 MobiDBLite consensus disorder prediction 321 400 - -
Trre9g04709 400 SUPERFAMILY RING/U-box 255 322 - -
Trre9g04709 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 322 IPR013083 -
Trre9g04709 400 MobiDBLite consensus disorder prediction 323 345 - -
Trre9g04709 400 Pfam zinc-ribbon 80 110 IPR039525 GO:0061630
Trre9g04709 400 FunFam E3 ubiquitin-protein ligase RING1-like 239 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04709 Trre-Chr9 53893970 53902219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04709 219 320 C3H Transcription Factor Family AT5G01980 46.154 3.08e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04709 K11982 - gmx:100813674 527.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01912 5 14243526 14244853 Trre9g04709 9 53893970 53902219 ECH
Trre9g04709 9 53893970 53902219 Trre9g04709 9 53893970 53902219 ECH