Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04704 ATGTCATCATCTTCAGAGCAACAAAAAACCAATGATGGTGATCATAATAATAATAACAATAATAATAATGGATCGTTGAAAAAAGGAAGATGGTCAAAAGAAGAGGATGAAATATTGGTAAATTATGTGAAAGAACATGGAATTAAAAATTGGAATGAAATACAAAAGAAAGCAGTACTTAATCGAGATGGAAAAAGTTGTCGTCTAAGATGGCATAATCACTTAGAACCGGGTGTGAAAAAGGGCAAATTTAGTGAAGAAGAAGCAGAAAAAGTCATTCGGATGCATGATGGTGGAATCAAAGAATGGTGTAAAATGGCTAAACAGTTGCCTGGAAGATCAGATAATGATATAAAGAATTTTTGGAATTCAAGAGAAAGAAAACAAAATAGAAAACTTAAATTGAGTGGTTCCAGCAGCAAGCAAGTTGATGGTTCAAAAGAAGACAAATTTAATATACCAAAAGGGATATTTAAAAAACAAAATTTACATAGAAAATATCCATCTAATTTTGATGAGATGAATGAAAACAACTTCTCTGAACAACTTCAAAAGTTGATTGATGATTCAAATAAGCAGCTTCCAAAGTTTTCAGAGTTGGTTGATGATTCAAGGATGCCCTACAACAATGTGGGAAGTACTTCTATAAGCAATCATACTGCCCCATCATCATGGATTGATAGGGATAGCATTGGAACTTCTTTTATGCATGATGCCAGGGTACCAAATCCATCTCCAGTCTCAACATATTTTGAAAGTCAAAATATGGATAGAAAATATCCATCAAGATATGATGAGATAAATAAAAACAACTCTAAACAACTTCCAAACTTATTTGATATTCCAAATAAGGAGCTTTCAAAGTGGGTTGATGATTCAAATATGCTCAGCAATAATGTGGGAAGTGCTTCTACGAGCAATCATACTATCCCAACAAGGAATAGGGTACCATATCAAAATATGAACTATTCACTTCCTCCATTGGATCATAGTTTATATGGAAAATATCCATCAATATCTGATGAGATAAATAAAAACAACTATGAACAGCTTTCAAACTCATTCCAAGTCCCAAATAAGGAGCTTCCAGAGTTGGTTTATGATTCAAATATGCTCAACAGTAATGTGGGAAGTATTTCTACAAGGAATCTTACTACCCCAACATGCATTAATAGGTGA 1179 0.3299 MSSSSEQQKTNDGDHNNNNNNNNGSLKKGRWSKEEDEILVNYVKEHGIKNWNEIQKKAVLNRDGKSCRLRWHNHLEPGVKKGKFSEEEAEKVIRMHDGGIKEWCKMAKQLPGRSDNDIKNFWNSRERKQNRKLKLSGSSSKQVDGSKEDKFNIPKGIFKKQNLHRKYPSNFDEMNENNFSEQLQKLIDDSNKQLPKFSELVDDSRMPYNNVGSTSISNHTAPSSWIDRDSIGTSFMHDARVPNPSPVSTYFESQNMDRKYPSRYDEINKNNSKQLPNLFDIPNKELSKWVDDSNMLSNNVGSASTSNHTIPTRNRVPYQNMNYSLPPLDHSLYGKYPSISDEINKNNYEQLSNSFQVPNKELPELVYDSNMLNSNVGSISTRNLTTPTCINR 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04704 392 SMART sant 80 128 IPR001005 -
Trre9g04704 392 SMART sant 27 77 IPR001005 -
Trre9g04704 392 MobiDBLite consensus disorder prediction 1 27 - -
Trre9g04704 392 SUPERFAMILY Homeodomain-like 26 122 IPR009057 -
Trre9g04704 392 MobiDBLite consensus disorder prediction 115 150 - -
Trre9g04704 392 Gene3D - 83 150 - -
Trre9g04704 392 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 130 IPR017930 -
Trre9g04704 392 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 79 IPR017930 -
Trre9g04704 392 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 2 344 - -
Trre9g04704 392 CDD SANT 83 123 IPR001005 -
Trre9g04704 392 CDD SANT 30 75 IPR001005 -
Trre9g04704 392 FunFam MYB-related transcription factor 27 80 - -
Trre9g04704 392 MobiDBLite consensus disorder prediction 119 133 - -
Trre9g04704 392 Gene3D - 27 80 - -
Trre9g04704 392 ProSiteProfiles Myb-like domain profile. 23 75 IPR001005 -
Trre9g04704 392 Pfam Myb-like DNA-binding domain 31 91 - -
Trre9g04704 392 ProSiteProfiles Myb-like domain profile. 76 126 IPR001005 -
Trre9g04704 392 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04704 Trre-Chr9 53878458 53881639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04704 1 135 MYB Transcription Factor Family AT3G11440 45.695 7.44e-37 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre9g04704 Myb_DNA-bind_6 2.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04704 K09422 - tpra:123922667 342.428