Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04703 ATGGATTGCAAAAAACAAAAGAATAAGCTCGAAGATGGTAGGACACATCAGGATACTAGGGCAAATTCCATGAAATCCGTAGAGAAGAAGAAAAGTTTAGCTTCAACTTCTAATTCTTGTAAAGTTAATGATAAACCAAAGGGTAATCATCATCATGAAGGATCAACAAGTAAAAAAATTCACAAGTGTGAATTTTGTAACAAAATTTTTAATTGTGGAAAAGCATTAGGTGGTCACAAAAGATTTCATCTTCAACAACTAAGGAAAGAGAATGAAGCTAAAGCTAGGGCTAATTTCAATTCTTCTAATAATGATGGAAAACAAATATGTAATGTTTGCAAGAAGAATTTTCCATCTAAGAAAGCCTTATATGGTCACATGAGATCTCACCCCGAAAGGGAATGGAGGGGTATTCATCCTAATAAGTATAATTATAGTATTGATTATGATGATGATTATGATAATCATGATCAAGATCAATATTTTATTGGTAAACCTAAAAAATTGGTTATTGATGATGAATCAATATCTTGGCCACCAAGATCGTTTAAAACCAATAAAAGGGGTCGAAGCTATGAAGTTGATAATGCTGCTCAAATTCTCATTCATATGTCTAGGGCTAAAAGTTTATATGAGAATTTTGATTATGAGGAGAAAGTGTTACCTAGTACTAGTGATCTAGTTGGTGACAATATTGGTGAAACAAAATTGAAGAATGATAGTAACAAAAAAATGAAGATGTTGGTGAAATTGAAGAATCCATGTTTAGCTTCCAAAGAGAAGAATCTTAATAGGTATGATTGTGAGATTGGGGAATCAAGTCAATCAAAATCAAGAATTGTTCGACCTTTTGATTTGAATGAGTGA 867 0.3183 MDCKKQKNKLEDGRTHQDTRANSMKSVEKKKSLASTSNSCKVNDKPKGNHHHEGSTSKKIHKCEFCNKIFNCGKALGGHKRFHLQQLRKENEAKARANFNSSNNDGKQICNVCKKNFPSKKALYGHMRSHPEREWRGIHPNKYNYSIDYDDDYDNHDQDQYFIGKPKKLVIDDESISWPPRSFKTNKRGRSYEVDNAAQILIHMSRAKSLYENFDYEEKVLPSTSDLVGDNIGETKLKNDSNKKMKMLVKLKNPCLASKEKNLNRYDCEIGESSQSKSRIVRPFDLNE 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04703 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 108 135 IPR013087 -
Trre9g04703 288 Pfam C2H2-type zinc finger 109 132 - -
Trre9g04703 288 Pfam C2H2-type zinc finger 61 85 - -
Trre9g04703 288 SMART c2h2final6 108 130 IPR013087 -
Trre9g04703 288 SMART c2h2final6 61 83 IPR013087 -
Trre9g04703 288 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Trre9g04703 288 MobiDBLite consensus disorder prediction 1 27 - -
Trre9g04703 288 MobiDBLite consensus disorder prediction 28 43 - -
Trre9g04703 288 ProSitePatterns Zinc finger C2H2 type domain signature. 110 130 IPR013087 -
Trre9g04703 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 88 IPR013087 -
Trre9g04703 288 SUPERFAMILY beta-beta-alpha zinc fingers 59 130 IPR036236 -
Trre9g04703 288 Gene3D Classic Zinc Finger 60 130 - -
Trre9g04703 288 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 92 238 - -
Trre9g04703 288 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04703 Trre-Chr9 53874124 53875083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04703 61 146 C2H2 Transcription Factor Family AT2G26940 32.174 2.65e-12 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre9g04703 zf-C2H2_6 0.00017 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04703 - - tpra:123922668 423.705