Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04697 ATGATTATTGATATTCTTATCATTCATCTAATCTCAGGAAATACAAAGATTCAAAGTAAGACAAAGCAGACTTCAAATTCTCCGGACCAAAAAACCGAATTGAAAACTTCTGCATCAAATGATGACTTATCCATCTCCAATAATGTTAAGTCTTTTAGCTTCAATGATCTAAAAGAGGCGACTAGGAACTTCCGGCAAGAAAATTTAATCGGCGAAGGAGGGTTTGGTTTTGTCTTCAAAGGATGGATAGATGAGAACACAGGCGCTCCTACAAAACCCGGAAATGGAATTGTAGTTGCCATTAAGCGGCTTAAACCAGAAAGTTTTCAAGGTCACAAGGAATGGCTTGCAGAAGTCAATTATCTAGGCCAACTTCACCATGAAAATTTGGTGAGGCTTATTGGTTACTGTTCAGAAGGAAAAAACAGGCTTCTAGTTTATGAGTTTATGCAGAAAGGAAGTTTGGAAAATCACTTATTCAGAAAAGGTGTTCAACCGATTTCCTGGATGACACGGATCAATATTGCGATTGGTGTAGCAAGAGGACTAGCATTCTTACATTCCCTTGACGCAAATGTTATTTATCGTGATTTAAAGGCTTCCAACATCCTACTTGACTCGGATTTCAATGCAAATCTTTCGGATTTTGGCTTAGCAAGAGATGGTCCAACCGGAGATAACACTCATGTTTCAACTCGAATTATCGGAACTCATGGTTATGCCGCACCAGAATATGTAGCCACAGGTCATTTAACAGCAAGGAGCGATGTATACAGCTTCGGCGTTGTCTTGTTAGAGTTACTAACAGGACGGCGTGTAGTTGACGAAGATAGACCTGGATACTCGGAAGACACGCTTGTGGATTGGGCAATGCCTTTTCTAAGTGACAACAGAAGAATATTGAGAATCATGGATACAAAGTTAGGTGGTCAATACTCGAAAAAAGGAGCACAAGCTGCAGCTGCACTTATTCTAAATTGTGTTAATACTGATCCTAAACATAGACCAACTATGGTAGATGTTTTATCGGCATTGGAAGCGTTACATTCGTCAAATTCATTTCCAAGGACACCAAAATCTGGAGCTGATAATCATCATCATGGAACCAAGCATTCTAATCATCATCATCATCATTCACATAAGTCAATTACCAATAATACTAGAAAACATTGA 1173 0.3896 MIIDILIIHLISGNTKIQSKTKQTSNSPDQKTELKTSASNDDLSISNNVKSFSFNDLKEATRNFRQENLIGEGGFGFVFKGWIDENTGAPTKPGNGIVVAIKRLKPESFQGHKEWLAEVNYLGQLHHENLVRLIGYCSEGKNRLLVYEFMQKGSLENHLFRKGVQPISWMTRINIAIGVARGLAFLHSLDANVIYRDLKASNILLDSDFNANLSDFGLARDGPTGDNTHVSTRIIGTHGYAAPEYVATGHLTARSDVYSFGVVLLELLTGRRVVDEDRPGYSEDTLVDWAMPFLSDNRRILRIMDTKLGGQYSKKGAQAAAALILNCVNTDPKHRPTMVDVLSALEALHSSNSFPRTPKSGADNHHHGTKHSNHHHHHSHKSITNNTRKH 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04697 390 ProSiteProfiles Protein kinase domain profile. 64 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04697 390 MobiDBLite consensus disorder prediction 18 39 - -
Trre9g04697 390 CDD STKc_IRAK 70 348 - -
Trre9g04697 390 Gene3D Transferase(Phosphotransferase) domain 1 150 367 - -
Trre9g04697 390 SMART serkin_6 64 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04697 390 SUPERFAMILY Protein kinase-like (PK-like) 42 346 IPR011009 -
Trre9g04697 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Trre9g04697 390 MobiDBLite consensus disorder prediction 352 390 - -
Trre9g04697 390 ProSitePatterns Protein kinases ATP-binding region signature. 70 102 IPR017441 GO:0005524
Trre9g04697 390 Pfam Protein tyrosine and serine/threonine kinase 67 344 IPR001245 GO:0004672|GO:0006468
Trre9g04697 390 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 150 358 - -
Trre9g04697 390 PANTHER OS01G0588500 PROTEIN-RELATED 24 349 - -
Trre9g04697 390 MobiDBLite consensus disorder prediction 368 390 - -
Trre9g04697 390 Gene3D Phosphorylase Kinase; domain 1 38 149 - -
Trre9g04697 390 FunFam Serine/threonine-protein kinase BIK1 30 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04697 Trre-Chr9 53834966 53836644 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04697 14 345 Glycoside Hydrolase AT3G07070 48.521 5.55e-105 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre9g04697 PK_Tyr_Ser-Thr 7.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04697 - - gmx:102664409 623.624