Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04696 ATGGGAAACTGTTTCAGAAAACCAGTTTGTCATGTTTCTTCAACAACTTTATTTGGAAATACAAAGATTCAAAGTAAGACAAAGCAGACTTCAAATTCTCCGGACCAAAAAACCGAATTGAAAACTTCTGCATCAAATGATGACTTATCCATCTCCAATAATGTTAAGTCTTTTAGCTTCAATGATCTAAAAGAGGCGACTAGGAACTTCCGGCAAGAAAATTTAATCGGCGAAGGAGGGTTTGGTTTTGTCTTCAAAGGATGGATAGATGAGAACACAGGCGCTCCTACAAAACCCGGAAATGGAATTGTAGTTGCCATTAAGCGGCTTAAACCAGAAAGTTTTCAAGGTCACAAGGAATGGCTTGCAGAAGTCAATTATCTAGGCCAACTTCACCATGAAAATTTGGTGAGGCTTATTGGTTACTGTTCAGAAGGAAAAAACAGGCTTCTAGTTTATGAGTTTATGCAGAAAGGAAGTTTGGAAAATCACTTATTCAGAAAAGGTGTTCAACCGATTTCCTGGATGACACGGATCAATATTGCGATTGGTGTAGCAAGAGGACTAGCATTCTTACATTCCCTTGACGCAAATGTTATTTATCGTGATTTAAAGGCTTCCAACATCCTACTTGACTCGGATTTCAATGCAAATCTTTCGGATTTTGGCTTAGCAAGAGATGGTCCAACCGGAGATAACACTCATGTTTCAACTCGAATTATCGGAACTCATGGTTATGCCGCACCAGAATATGTAGCCACAGGTCATTTAACAGCAAGGAGCGATGTATACAGCTTCGGCGTTGTCTTGTTAGAGTTACTAACAGGACGGCGTGTAGTTGACGAAGATAGACCTGGATACTCGGAAGACACGCTTGTGGATTGGGCAATGCCTTTTCTAAGTGACAACAGAAGAATATTGAGAATCATGGATACAAAGTTAGGTGGTCAATACTCGAAAAAAGGAGCACAAGCTGCAGCTGCACTTATTCTAAATTGTGTTAATACTGATCCTAAACATAGACCAACTATGGTAGATGTTTTATCGGCATTGGAAGCGTTACATTCGTCAAATTCATTTCCAAGGACACCAAAATCTGGAGCTGATAATCATCATCATGGAACCAAGCATTCTAATCATCATCATCATCATTCACATAAGTCAATTACCAATAATACTAGAAAACATTGA 1191 0.3913 MGNCFRKPVCHVSSTTLFGNTKIQSKTKQTSNSPDQKTELKTSASNDDLSISNNVKSFSFNDLKEATRNFRQENLIGEGGFGFVFKGWIDENTGAPTKPGNGIVVAIKRLKPESFQGHKEWLAEVNYLGQLHHENLVRLIGYCSEGKNRLLVYEFMQKGSLENHLFRKGVQPISWMTRINIAIGVARGLAFLHSLDANVIYRDLKASNILLDSDFNANLSDFGLARDGPTGDNTHVSTRIIGTHGYAAPEYVATGHLTARSDVYSFGVVLLELLTGRRVVDEDRPGYSEDTLVDWAMPFLSDNRRILRIMDTKLGGQYSKKGAQAAAALILNCVNTDPKHRPTMVDVLSALEALHSSNSFPRTPKSGADNHHHGTKHSNHHHHHSHKSITNNTRKH 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04696 396 CDD STKc_IRAK 76 354 - -
Trre9g04696 396 MobiDBLite consensus disorder prediction 358 396 - -
Trre9g04696 396 MobiDBLite consensus disorder prediction 23 45 - -
Trre9g04696 396 FunFam Serine/threonine-protein kinase BIK1 36 155 - -
Trre9g04696 396 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 156 364 - -
Trre9g04696 396 Gene3D Phosphorylase Kinase; domain 1 44 155 - -
Trre9g04696 396 ProSiteProfiles Protein kinase domain profile. 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04696 396 Pfam Protein tyrosine and serine/threonine kinase 73 350 IPR001245 GO:0004672|GO:0006468
Trre9g04696 396 ProSitePatterns Protein kinases ATP-binding region signature. 76 108 IPR017441 GO:0005524
Trre9g04696 396 Gene3D Transferase(Phosphotransferase) domain 1 156 373 - -
Trre9g04696 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Trre9g04696 396 PANTHER OS01G0588500 PROTEIN-RELATED 30 355 - -
Trre9g04696 396 SMART serkin_6 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04696 396 MobiDBLite consensus disorder prediction 374 396 - -
Trre9g04696 396 SUPERFAMILY Protein kinase-like (PK-like) 48 352 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04696 Trre-Chr9 53834072 53836644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04696 3 351 Glycoside Hydrolase AT3G07070 46.961 8.69e-106 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre9g04696 PK_Tyr_Ser-Thr 7.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04696 - - gmx:102664409 647.506