Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04684 ATGGGGTTGCATCCTAGATCAATGATTTTCCATCTGATCTTATCCATTGGTTATTGTTTCTATCTTGGCAGAGCCATCGATTGTGGTGGAAATCATGTTGCACGTACCATTATTGTTGATCAACAAGGAAAAGGAGCATTCAACATGATTCAACCTGCCATTGATTCAATAAAGAATAACAATGATCAATGGATTAAGATTCAAATAAATCCTGGAAGATATGCGGGACGTGTTAATATTCCCAAGGACAAACCGTGTATTATTTTAGAAGGATCTAATAGAGGAAATACAATAATTAGTTATGGTGATAAACAAGCAACAACAACATTTGTTTCAATGCCACCTAATGTGATTTTGCGTGGTATTACATTTGAGAACACATTTGGACATAATGGACCAGCATTAGCTGCTGCTATACAAGGTGATAAAACAGCTATATTTAATTGTGGTTTCTTGGGTTATCAAGATACTATATTTGATGGATACGGGCGTCATTATTATAAGAATTGTTATATTCAAGGTGAAGTTGACTTCATTTTTGGTTTTGCCCAATCTTATTATGAGAATTGTGTGATAAACGCAACACAAGATAGTTCTTTACCTTCAGGTTTCATCACAGCTCAATCTAGGAATTTACCAACTGAACAAGGTGGTTTTGTTTTTAGAAGAGGGTTTGTTGTTGGGATTGGTAAAGTGAAGTTAGGAAGAGCATATGGCCCTTACTCAAGAGTTATATTTTGGGGAACAAATCTTTCTTCTGTAGTACAACCTGAAGGATGGGATGCTTGGGACTACAAAGGCCATGAAAAAAACTTCATCTATGCAGAAGTTGATTGTATAGGACCAGGGTCTAATACTCAAGGACGTGTTTCATGGGAGAAGAAGCCAAATGAAATAAATATATATCATTATTCTTTACGATTTTTCATAAATCAAGATGGATGGCTTAACAACTTACCAATACCAACTACATTTGTGTAA 981 0.3527 MGLHPRSMIFHLILSIGYCFYLGRAIDCGGNHVARTIIVDQQGKGAFNMIQPAIDSIKNNNDQWIKIQINPGRYAGRVNIPKDKPCIILEGSNRGNTIISYGDKQATTTFVSMPPNVILRGITFENTFGHNGPALAAAIQGDKTAIFNCGFLGYQDTIFDGYGRHYYKNCYIQGEVDFIFGFAQSYYENCVINATQDSSLPSGFITAQSRNLPTEQGGFVFRRGFVVGIGKVKLGRAYGPYSRVIFWGTNLSSVVQPEGWDAWDYKGHEKNFIYAEVDCIGPGSNTQGRVSWEKKPNEINIYHYSLRFFINQDGWLNNLPIPTTFV 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04684 326 Pfam Pectinesterase 37 310 IPR000070 GO:0030599|GO:0042545
Trre9g04684 326 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 32 317 - -
Trre9g04684 326 Gene3D - 30 325 IPR012334 -
Trre9g04684 326 FunFam Pectinesterase 31 320 - -
Trre9g04684 326 SUPERFAMILY Pectin lyase-like 33 322 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04684 Trre-Chr9 53765917 53768416 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04684 10 269 Carbohydrate Esterase AT2G19150 44.485 6.05e-69 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04684 - - tpra:123922273 578.941