Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04683 ATGGGGTTGCCTCATAGATCAATGATTTTCCATCTGATCTTATCCATTGGTTATTGTTTCAATCTTGGCAGAGCTATCGATTGTGGTGGAAATCATGTTGCAAATACCATTGTTGTTGATCAACAAGGAAAAGGAGCATTCAACATGATACAACCTGCCATTGATTCAATAAAGAATAACAATGATCAATGGATTAAGATTCAAATAAATCCAGGAAGATATGTGGGACATGTTAATATTCCCTATGACAAGCCGTGTATTATTTTAGAAGGATCTAATAGAGGGAATACAATAATTAGTTATGGTGATAAACAAACATCAACATTTATTTCAATGCCACCTAATGTGATTTTGCGTGGTATTACATTTGAGAACACATTTGGACATAGTGAACGAGCTATAGCTGCTACTATAAATGGTGATAAAACAGCTATATTTAACTGTGGTTTTTTGGGTTACCAAGATACTTTATTTGATGGAAGTGGACGTCATTATTATAAGAATTGTTATATTCAAGGTGAAGTTGACTTCATTTTTGGTTTTGCCCAATCTTATTATGAGAACTGTGTGATAAACGCAACACAAGATAGTTCATTATATCCAGGTTATATCACAGCTCAATCTAGGAAATTACCAACTGATCGAGGTGGTTTTGTTTTTAGAAGAGGGTTTGTTGTTGGGATTGGTAAAGTGAATTTGGGAAGAGCATATGGCCCTTACTCAAGAGTTATATTTTGGGGAACAGACCTTTCTTCTGTAGTACAACCTGAAGGATGGGATGCTTGGGACTACAAAGGCCATGAAAAAAACTTTATCTATGCGGAAGTTGGTTGTACGGGACCGGGTTCTAATACTCAAGGGCGTGTTCCGTGGGAGAAAAAGCCAAATGAAATAAATATATATCATTATTCTTTACAAATATTCATAAATCAAGATGGATGGCTTAACAACCTACCAACTACATTTGTGTAA 972 0.3529 MGLPHRSMIFHLILSIGYCFNLGRAIDCGGNHVANTIVVDQQGKGAFNMIQPAIDSIKNNNDQWIKIQINPGRYVGHVNIPYDKPCIILEGSNRGNTIISYGDKQTSTFISMPPNVILRGITFENTFGHSERAIAATINGDKTAIFNCGFLGYQDTLFDGSGRHYYKNCYIQGEVDFIFGFAQSYYENCVINATQDSSLYPGYITAQSRKLPTDRGGFVFRRGFVVGIGKVNLGRAYGPYSRVIFWGTDLSSVVQPEGWDAWDYKGHEKNFIYAEVGCTGPGSNTQGRVPWEKKPNEINIYHYSLQIFINQDGWLNNLPTTFV 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04683 323 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 32 316 - -
Trre9g04683 323 FunFam Pectinesterase 31 319 - -
Trre9g04683 323 Pfam Pectinesterase 37 310 IPR000070 GO:0030599|GO:0042545
Trre9g04683 323 Gene3D - 30 322 IPR012334 -
Trre9g04683 323 SUPERFAMILY Pectin lyase-like 33 322 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04683 Trre-Chr9 53760768 53763274 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04683 12 268 Carbohydrate Esterase AT2G19150 44.689 3.01e-65 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04683 - - tpra:123922273 578.556