Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04680 ATGGGTTCTCAAAGTAATGGGCAACAGTCTCATTTACAGGCTAATAATCAGTTAATTAAGCAAAATTCATGGTATGGTCTTACTCTTGATGAGGTTAACAATCTATTAGGAGATTTAGGGAAGCCGTTAGGGAGCATGAATCTCGACGAGCTTCTTCAGAATGTATGGACTGCTGAAGGAAATAACGTTGTAGGAGTAGAGAGCGAGCATGTATCGTCTTCGTCTTCTCTTCAACGTCAGGCTAGTATGACGTTGGCTCGTGCTTTAAGTGGGAAGACGGTGGATGATGTATGGAGAGAAATCCAGCTAGGTCAGAAGAAACAATACGGAGATGATGTGAAAATTGAGGATAGGGAAATGAGTCTTGGTGGTACAACGTTGGAAGATTTTTTAGTACAAGCAGGGCTTTACGCTGGAGCTTCTGTTAGTTCTACGGTGGGGTTAGATGCAATGGATACTGCTATTCCTCAAAGCTTTCAACCGAAAACAAGCTTGTTATCCTCTTCTTCGATTAGTAGTTTGTCAGATGCAAAACCGGGGCGTAAAAGGGATGGACCGGATGCGTATGAGAAGGCTGTAGAAAGGAGGCTGAGAAGGAAAATCAAGAATAGGGAATCTGCTGCTCGTTCACGAGCAAGAAAACAGGCTTACCATAATGAACTGGTTACCAAGGTTACTCTGCTAGAACAGCAAAATACGCAGCTCAAGAAAGAGAAGGAGTTTGAGCAAGGCCTACCACCTGAACCATCATCTGAACCGAAATATCGTCTTCGAAGAATAAGTTCTGCCCATTTCTGA 798 0.4323 MGSQSNGQQSHLQANNQLIKQNSWYGLTLDEVNNLLGDLGKPLGSMNLDELLQNVWTAEGNNVVGVESEHVSSSSSLQRQASMTLARALSGKTVDDVWREIQLGQKKQYGDDVKIEDREMSLGGTTLEDFLVQAGLYAGASVSSTVGLDAMDTAIPQSFQPKTSLLSSSSISSLSDAKPGRKRDGPDAYEKAVERRLRRKIKNRESAARSRARKQAYHNELVTKVTLLEQQNTQLKKEKEFEQGLPPEPSSEPKYRLRRISSAHF 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04680 265 Pfam bZIP transcription factor 195 238 IPR004827 GO:0003700|GO:0006355
Trre9g04680 265 SUPERFAMILY Leucine zipper domain 195 241 IPR046347 GO:0003700|GO:0006355
Trre9g04680 265 Coils Coil 218 238 - -
Trre9g04680 265 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 193 238 IPR004827 GO:0003700|GO:0006355
Trre9g04680 265 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 193 245 - -
Trre9g04680 265 SMART brlzneu 191 263 IPR004827 GO:0003700|GO:0006355
Trre9g04680 265 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 198 213 IPR004827 GO:0003700|GO:0006355
Trre9g04680 265 MobiDBLite consensus disorder prediction 233 265 - -
Trre9g04680 265 Gene3D - 193 243 - -
Trre9g04680 265 CDD bZIP_plant_BZIP46 195 243 - -
Trre9g04680 265 MobiDBLite consensus disorder prediction 166 190 - -
Trre9g04680 265 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 20 260 IPR043452 GO:0003700|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04680 Trre-Chr9 53733889 53735939 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04680 13 265 bZIP Transcription Factor Family AT3G56850 43.051 1.20e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre9g04680 bZIP_1 4e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04680 K14432 - gmx:100798549 357.451