Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04678 ATGGCCAAGAAACGAAAGCTTCGATCCTCTGACCCCGAACCAACCAAACCAGTCGAACCCGAACCACAACAAGAAGTTGCAGAAGAACAACCCGACGAAGAGCCAACCCAAAACATGGCCGTCGATGAACAAACCACTCCAATACAAGAAGGAGAAGAACAACAAGGAGAGGGAGAAGAACAAGAACAAGAAGAAGTAGCAGAAGAAGATGAAGAAGACGAACAACAACAAGAGGACGAAACCCTGGAAAATCAACAGCAAGATTCCGCCGCTGAAGTTCCGAACAACGGTGATGGGTCGGAGCAGACTGAGACGACGACGGTGGAAGCTAACGGTGCTGGGGAAACGAACAATAACGACGAAGAAGAAGAGGAAGATCTAGATTTGGAAGAAGAACCTGTTGAGAAGCTTCTAGAGCCTTTCACGAAGGAGCAATTACACGCTCTTGTGAAACAAGCGATTGAGAAGCATCCAGATCTATCGGAGAATGTTCGTCAGCTGGCTGATGTGGACCCTGCTCACCGGAAAATTTTTGTTCATGGCCTTGGATGGGATGCCACCTCCGAAACCCTAATCAGTGTGTTTTCGAAGTATGGCGAAATTGAAGATTGTAAGGCTGTAACTGATAAGGTTTCTGGAAAATCAAAGGGTTATGCTTTTATTTTGTTTAAGCATAGGACCGGTTGTCGCAGGGCGTTGAAGCAGCCGCAGAAGCAGATTGGTAATCGGACTACATCGTGTCAGCTGGCTTCTGCTGGACCTGTTCCGGCTCCTCCACCGAATGGTCCACCAGTTTCTGAATACACTCAAAGGAAGATTTTTGTAAGCAATGTGAGTTCTGATATTGATCCTCAGAAACTGCTTGAGTTTTTCAAGCAGTTTGGAGAGGTTGATGATGGTCCTTTGGGTCTTGATAAGGCTACGGGGAGGCCGAAGGGTTTTGCTCTTTTTGTTTACAAGTCTGTTGAGAGTGCTAAGAAGGCTTTGGAAGAGCCAAATAAGACTTTTGAGGGTCATACTTTGTATTGTCAGAAGGCTGTTGATGGTCCTAAGGGATACAAGGGTCATTATCAGCAGCAACAACATCACCAGTCGCATCATTCACACCATCATCACCAGCCTCACTACAATTCAAGGAAAGAAAAGAAGTATTCTCATGGTGGTGGTGGGCCATCTCATGGTGGTCACTTGATGGCACCTGCTGGTCCTGCTGCTGGGGGTTACAGCAATGCGGGAGTTCAGCCTCAGGGGCCATTGAATCCGGTACTTGGACAGGCGTTATCAGCTTTGCTTGCGAATCAAGGAGCTGGTTTGGGGCTTGGGAATTTGCTTGGAGGTCTTGGCGGTGCACCGACCTCATCCTGGTCCTGGTGGCGCTCCTTACATGAATCACTAGATACCCTCATAGATGCATCAAACATTTAG 1425 0.4758 MAKKRKLRSSDPEPTKPVEPEPQQEVAEEQPDEEPTQNMAVDEQTTPIQEGEEQQGEGEEQEQEEVAEEDEEDEQQQEDETLENQQQDSAAEVPNNGDGSEQTETTTVEANGAGETNNNDEEEEEDLDLEEEPVEKLLEPFTKEQLHALVKQAIEKHPDLSENVRQLADVDPAHRKIFVHGLGWDATSETLISVFSKYGEIEDCKAVTDKVSGKSKGYAFILFKHRTGCRRALKQPQKQIGNRTTSCQLASAGPVPAPPPNGPPVSEYTQRKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGRPKGFALFVYKSVESAKKALEEPNKTFEGHTLYCQKAVDGPKGYKGHYQQQQHHQSHHSHHHHQPHYNSRKEKKYSHGGGGPSHGGHLMAPAGPAAGGYSNAGVQPQGPLNPVLGQALSALLANQGAGLGLGNLLGGLGGAPTSSWSWWRSLHESLDTLIDASNI 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04678 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 175 252 IPR000504 GO:0003723
Trre9g04678 474 SUPERFAMILY RNA-binding domain, RBD 255 366 IPR035979 GO:0003676
Trre9g04678 474 MobiDBLite consensus disorder prediction 1 15 - -
Trre9g04678 474 MobiDBLite consensus disorder prediction 116 131 - -
Trre9g04678 474 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 41 356 - -
Trre9g04678 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 271 348 IPR000504 GO:0003723
Trre9g04678 474 MobiDBLite consensus disorder prediction 360 379 - -
Trre9g04678 474 Gene3D - 261 396 IPR012677 -
Trre9g04678 474 MobiDBLite consensus disorder prediction 237 251 - -
Trre9g04678 474 Gene3D - 167 253 IPR012677 -
Trre9g04678 474 MobiDBLite consensus disorder prediction 53 81 - -
Trre9g04678 474 MobiDBLite consensus disorder prediction 37 52 - -
Trre9g04678 474 MobiDBLite consensus disorder prediction 236 267 - -
Trre9g04678 474 MobiDBLite consensus disorder prediction 351 403 - -
Trre9g04678 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 177 244 IPR000504 GO:0003723
Trre9g04678 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 273 341 IPR000504 GO:0003723
Trre9g04678 474 MobiDBLite consensus disorder prediction 82 115 - -
Trre9g04678 474 SUPERFAMILY RNA-binding domain, RBD 164 256 IPR035979 GO:0003676
Trre9g04678 474 Coils Coil 58 88 - -
Trre9g04678 474 MobiDBLite consensus disorder prediction 1 131 - -
Trre9g04678 474 SMART rrm1_1 272 344 IPR000504 GO:0003723
Trre9g04678 474 SMART rrm1_1 176 248 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04678 Trre-Chr9 53724112 53726476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04678 267 350 C2H2 Transcription Factor Family AT2G19380 30.952 2.81e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04678 K12741 - gmx:100792637 455.292