Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04668 ATGGGTTCCCAGGGCCAGGAGGGTGAAGACTGTTTGCCCCCACCACCTCCCATCGTTCCTTCTGATGTTGAACCAATTAAAATTGTTGAACCATATGAGCATGTCAAAAGGAAGCTTCCTACCAAGGTTCCAATGGCTAGGCGTGGCCTAGGCTCAAAGGGAACTAAACTTCCTTTACTGACCAATCATTTTAAAGTTAATGTTGAAAACACTGATGGGCATTTCTTTCAGTACAGTGTGGCTTTATTTTATGAAGATGGACGCCCTGTTGAAGGCAAAGGTTCTGGTAGGAAGATACTTGACAGAGTTCAAGAGACCTATAATTCTGAGCTCAATGGAAAGGACATTGCCTATGATGGAGAAAAAACTCTGTTCACTATTGGCTCTTTAGCCCAGAACAAGCTTGAGTTTAAAGTTGTTCTTGATGATGTTGTTTCAAACAGGAACAATGGAAACTGCAGTCCTGAAGCGAATGGAAGTCCTAATGAAGCTGATAGGAAGAGGGTTAAGAAATCCTACAGATCAAAGAGTTATAAAGTTGAGATCAGCTTTGCTTCCAAGATTCCACTGCAGGCCATTGCCAATGCTTTGAAGGGGCATGAAACGGAGAATTATCAAGAAGCCATCAGGGTTCTTGATATTATCTTGAGGCAACATGCTGCCAAACAAGGCTGTCTGCTTGTGCGACAAAATTTCTTCCACAACGATCCTAAGAATTTCTCTGATGTTGGTGGTGGTGTACTTGGATGCAGAGGGCTGCATTCCAGCTTCAGGACCACCCAGAGTGGTCTATCTTTAAACATAGATGTGTCGACAACTATGATTGTCCGTCCTGGACCTGTTGTTGATTTCTTAATTGCAAATCAGAATGTTAGGGATCCCTTCAGCCTTGACTGGAATAAGGCCAAAAGGACTCTAAAGAATTTGAGGGTCACAGCCAGCCCATCCAATCAAGAGTACAAGATTACTGGGCTGAGTGAACTACCTTGCAAGGACCAGCTGTTTACACTGAAGAAGAGAGGTGCTGGTGAAGATGAATCTGAAGAGATCACAGTTTACGATTATTTTGTTAACCGCAGAAAGATTCCTTTGCAGTACTCTGCTGACCTTCCATGTATCAATGTTGGAAAGCCTAAGCGCCCTACATATGTCCCAATTGAGCTTTGCTCATTGGTATCCCTTCAACGGTATACCAAAGCCCTTTCCACTCTTCAAAGGTCATCGCTTGTGGAAAAGTCAAGGCAGAAGCCTAAAGAGCGGATGCAGGTCTTGACAGATGCTTTGAGAACTAGCAACTATGGCTCTGAGCCAATGCTACGTAACTGCGGCATTTCAATCACCTCTGGGTTCACACAAGTTGATGGGAGGGTTTTGCAGGCTCCAAGGTTGAAGTTTGGCAATGGAGAAGATTTCAGTCCCAGAAATGGGAGATGGAATTTTAATAACAAGAGAATTGTGCAACCTGTTAAAATTGAAAAGTGGGCTGTGGTGAACTTTTCTACTCGTTGTGATGTGCGTGGACTTGTAAGAGATTTGATCAAATGTGGAGGAATGAAAGGAATCGCTGTGGAACAACCATTTGATGTATTTGACGAAAATGGTCAGTTTAGGCGTGCACCACCATTGGTAAGAGTTGAGAAAATGTTTGAGTTTGCTCAGTCCAAACTTCCAGGTGCTCCTAAGTTTCTTCTTTGTCTGCTTCCGGAGAGGAAGAACTCTGATCTTTATGGTCCATGGAAGAAGAAATGTCTTGCTGATTACGGAATTGTTACTCAGTGCATTGCTCCAACCAGGGTAAACGACCAGTATCTGACAAATGTTTTGCTGAAGATAAACGCTAAGCTTGGTGGAATGAATTCTCTGTTGGGTGTTGAACATAATCCCTCCATCCCAATTGTGTCTAAAGCCCCCACTCTCATTTTGGGCATGGATGTTTCTCATGGTTCACCTGGGCAAACTGACATTCCTTCAATTGCTGCGGTTGTAAGCTCGAGGCAATGGCCAATGATATCTAAATATAGGGCATGTGTCCGAACTCAGGGTGCAAAGGTGGAAATGATAGACAATTTGTTCAAGCCAGTGTCTGGTGATGTTGATGAAGGAATTATAAGGGAGCTGTTGATTGATTTCTATACAAGTTCTGGTAACAGAAAACCAGACAACATCATCATTTTCAGGGATGGTGTCAGTGAGTCCCAGTTTAACCAAGTGTTGAACATTGAACTGAGCCAAATCATTGAGGCCTGTAAATTTCTGGATGAAAGCTGGAACCCCAAATTTTTGGTGATTGTTGCACAGAAGAATCATCACACAAAATTCTTCCAGCCTGGATCCCCAGACAATGTGCCTCCTGGAACTGTTGTTGACAACAAAATTTGTCATCCTAGAAATTATGATTTCTATTTGTGTGCTCATGCAGGAATGATTGGCACAAGCAGGCCAACACATTATCATGTTCTTTTGGATGAGATTGGCTTTTCTCCAGATGATTTACAGGAGCTTGTGCACTCACTTTCTTATGTGTATCAGCGGAGCACCACTGCAATTTCTGTTGTTGCTCCAATCTGCTATGCGCACTTGGCTGCTTCCCAGGTTGGACAGTTCATGAAGTTTGAGGATAAGTCTGAAACCAACTCTAGCCATGGTGGTAGCCATGGTGGTATCAATGCCTCCCCTGTCCCTCAGTTGCCCAAGTTGAGTGAGGGTGTCTGCAATTCTATGTTTTTTGTTTGA 2733 0.4336 MGSQGQEGEDCLPPPPPIVPSDVEPIKIVEPYEHVKRKLPTKVPMARRGLGSKGTKLPLLTNHFKVNVENTDGHFFQYSVALFYEDGRPVEGKGSGRKILDRVQETYNSELNGKDIAYDGEKTLFTIGSLAQNKLEFKVVLDDVVSNRNNGNCSPEANGSPNEADRKRVKKSYRSKSYKVEISFASKIPLQAIANALKGHETENYQEAIRVLDIILRQHAAKQGCLLVRQNFFHNDPKNFSDVGGGVLGCRGLHSSFRTTQSGLSLNIDVSTTMIVRPGPVVDFLIANQNVRDPFSLDWNKAKRTLKNLRVTASPSNQEYKITGLSELPCKDQLFTLKKRGAGEDESEEITVYDYFVNRRKIPLQYSADLPCINVGKPKRPTYVPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPKERMQVLTDALRTSNYGSEPMLRNCGISITSGFTQVDGRVLQAPRLKFGNGEDFSPRNGRWNFNNKRIVQPVKIEKWAVVNFSTRCDVRGLVRDLIKCGGMKGIAVEQPFDVFDENGQFRRAPPLVRVEKMFEFAQSKLPGAPKFLLCLLPERKNSDLYGPWKKKCLADYGIVTQCIAPTRVNDQYLTNVLLKINAKLGGMNSLLGVEHNPSIPIVSKAPTLILGMDVSHGSPGQTDIPSIAAVVSSRQWPMISKYRACVRTQGAKVEMIDNLFKPVSGDVDEGIIRELLIDFYTSSGNRKPDNIIIFRDGVSESQFNQVLNIELSQIIEACKFLDESWNPKFLVIVAQKNHHTKFFQPGSPDNVPPGTVVDNKICHPRNYDFYLCAHAGMIGTSRPTHYHVLLDEIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGQFMKFEDKSETNSSHGGSHGGINASPVPQLPKLSEGVCNSMFFV 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04668 910 Pfam Mid domain of argonaute 472 505 IPR032473 -
Trre9g04668 910 SUPERFAMILY Ribonuclease H-like 547 868 IPR012337 -
Trre9g04668 910 CDD Piwi_ago-like 437 862 IPR045246 -
Trre9g04668 910 Gene3D - 457 623 - -
Trre9g04668 910 ProSiteProfiles Piwi domain profile. 562 870 IPR003165 GO:0003676
Trre9g04668 910 ProSiteProfiles PAZ domain profile. 303 393 IPR003100 GO:0005515
Trre9g04668 910 SMART DUF1785_2 226 278 IPR014811 -
Trre9g04668 910 FunFam Protein argonaute 3 630 910 - -
Trre9g04668 910 SMART Piwi_a_2 562 870 IPR003165 GO:0003676
Trre9g04668 910 FunFam Protein argonaute 7 273 397 - -
Trre9g04668 910 MobiDBLite consensus disorder prediction 1 22 - -
Trre9g04668 910 Gene3D - 629 910 IPR036397 GO:0003676
Trre9g04668 910 Pfam N-terminal domain of argonaute 56 216 IPR032474 -
Trre9g04668 910 Pfam Piwi domain 563 870 IPR003165 GO:0003676
Trre9g04668 910 Gene3D paz domain 272 397 - -
Trre9g04668 910 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 42 872 - -
Trre9g04668 910 MobiDBLite consensus disorder prediction 873 894 - -
Trre9g04668 910 Pfam Argonaute linker 1 domain 228 276 IPR014811 -
Trre9g04668 910 CDD PAZ_argonaute_like 278 392 - -
Trre9g04668 910 Pfam Argonaute linker 2 domain 419 465 IPR032472 -
Trre9g04668 910 SUPERFAMILY PAZ domain 273 433 IPR036085 GO:0005515
Trre9g04668 910 Pfam PAZ domain 282 409 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04668 Trre-Chr9 53667360 53673638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04668 47 909 Eukaryotic Initiation Factors Gene Family AT5G43810 34.850 2.80e-159 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04668 K11593 - gmx:100779439 1548.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g04668 9 53667360 53673638 Trre9g04668 9 53667360 53673638 ECH
Trre5g02627 5 20599818 20605367 Trre9g04668 9 53667360 53673638 PCT