Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04664 ATGCAGGCTATCTGGTTGATGCTGTTGTTGGTGGTGAATATTGCATTAGGGAATTCAGATATTGATGCACTTCTTGAACTCAAGAAGGGTATTAAAAATGACCCTTTTGGATTAGTTCTTAATTCTTGGGATTCAAAGTCATTAGACTCTAACCAATGTCCACAAAATTGGTATGGAATATTATGCAGTGAAGGCAATGTTTTATCTATCACTTTGGACAATTCTGGTTTGGTTGGAGAGTTTAATTTCCTTGCAATTAGTACCCTTACAATGCTTCACAATTTGTCGCTCGTAAACAACAACTTCACAGGAAGTATGTTACATATTAGTCCGATGAAATCACTTAAATATCTCGATTTGTCTCTCAACAAGTTCGCCGGCTCACTTCCTCCTAGCTTCGTCGAATTGCGTAGTTTAGTGTATCTGAATCTTTCTTCAAATGAACTTAGTGGCACTATTCCGAACTTGTTTCACAAACTTGACCAATTGAAGTATTTAGATTTTCACGGTAATAGCTTTTCGGGCGATATTATGCATATATTTGATCAGATGGGAAGTGTGTTACATGTTGACTTAAGCAAAAACAGGTTTTCTGGTACACTTGATTTGGGACTTGGAGATGTTTCATTTCTATCTTCAATTCAACATTTGAATGTTAGTCACAATTCCTTGGTTGGTGAACTATTTGTTCATGATGGTATGCCATATCTTGATAATTTAGAGGTCTTTGATGCTAGTAATAATCAGCTAGTTGGTCATATACCGTCTTTCACGTTCGTCGTATCGCTAAGGATTCTTCGACTTGCATGTAATCAGTTGACAGGTTCTCTGCCAGAAGCTTTGTTGAAGGAAAGTTCAATGGTGTTGTCTGAACTCGATCTTAGTCAAAACAAGCTTGAAGGTTTCATCGGAAGCATTACCTCGATGACTCTCAGGAAGCTTAATATATCTTCAAACAAATTGTCAGGTCCATTACCTCTCAAAGTAGGTCACTGTGCCATCATAGATTTGAGTAACAATGTGTTGTCAGGTAACTTGTCAAGGATCAAGTATTGGGGGAACTATGTGGAAGTTATTCAGCTAAGTACTAACTTTTTGTCGGGAACTCTGCCAAACGAAACAACGCAATTTTTAAGGTTAACTTCACTTAAGGTATCCAATAACTCATTGGAGGGATTTCTACCACCAGTTTTAGGAACATATCCGGAGCTAAACGAGATTGATCTTAGTCTCAACCGGCTTTCTGGTTTCCTCCTACCAACCCTTTTCGTCTCGACCAAATTGACTACTCTTAATCTCTCATACAATGAGTTTTCTGGTCCAATTCCTTTTCAACTTCCGAATAATAATCCATTGGTTTCTGCCGAAAATTTCAGTTTGATGTCGCTTGATCTTTCAAACAACAATTTGAGTGGAATTCTTTCTTCGAAAATTAAGGAACTTCATAATTTGGCATATCTCAATCTATGTAACAACAAACTGGAAGGTTCTATTCCTAATGATCTTCCAGATGAATTAAGAGGATTCAATGTGTCCTTTAATAATTTTTCTGGCGCTGTACCTCGTAACTTATTGAAGTTTCCCGAGTCATCATTTCATCCAGGAAATACTATGCTTCTATATCCAAATTCTCAATTATCACCAAAAGATAGTTCAATCTTAGGTTTGAGGTCACATAAGAACTATTTTCCTAGGAGTGTCTTGATTACATGTTTGGTTACCGGCGTTTTTGTGATTGCTATTATGGCTGCAATGGTTTACTATAGGATTCATCAGAAAAAAGAAAGAACTTCTAAACAAGATGCAAAAACAAGTGACATCATCCAAGAGAATACTTCTCCATCAAACAGAAGAAATTTGGAATCAATACCGCCTTCTCAAAGTGATGATACCAGAAACATTAATCCAACCTTAAAGAAGGCTAAAGATCCCGAGTTAGTTAAGAACGAAGAAGGAGCGTCTTCTCCAATGTCTATTTTATCGGCTTCGAATCCTTCACCTTCTACAAGTCATCAGTTTGAGAATCCAAGCCCTCTCAAAGTATCGTCTCCGGATAAACTGGTTGGTGACTTGTATCTATTTGATGGATCATTGATGCTAACTGCGGAAGAGCTTTCGTGCGCTCCAGCTGAAGTTATTGGTAGGAGTTGTCACGGAACACTCTACAAAGCTACAGTTGAATCTGGTCATGTTTTGGCTGTTAAATGGTTAAGAGAAGGAATAACGAAAGGAAAAAAGGAGTTAGCGAGGGAAATTAAGAAACTCGGGACAATCAAGCATCCAAGCTTGGTTTCGCTTCTTGGTTGCTACTTAGGGCCGAAGGAGCATGAGAGACTGATTATATCAAATTACATGAATGCATATTCTTTGGACATTTATCTCCATGAGGCTGATAAAAGAAATCTCCATCCTTTGTCTGTTGATGAAAGGCTCAGGGTAGCCGTAGAAGTGGCGCGATGTTTACTTTATCTGCACACCGAGAAAGCCATACCTCATGGCAATCTCAAATCCACAAACATTCTAATAGAAACTCCAAACAGAAATGTCTTGCTCACTGATTACAGCCTACACCGAATACTCACCGCTGCTGGTACTTCTGAGCAAATTCTGAATGCCGGTGCACTTGGTTACCGACCGCCCGAGTTTGCTAGATCAACCAAACCATGCCCTTCTTTGAAAAGTGATGTCTATGCATTCGGAGTTGTCTTGTTAGAGCTCTTATCAGGAAGAAAATCCGGAGAAATTGTTTTCGGGATTTCTGGCGTGGTTGAACTTACCGAATGGGTGAGATTCTTAGCTGAACAAGGTCGCTCTAACCAATGCTTTGAAAAATCCCTCATGGAAAATCACAACGGAGAAGGACCGTTTATGATTCTTGATAACATGCTAAAAGTAGCTCTTAGATGCATCCTTCCAGCATCTGAGAGACCTGATATGAAAACAGTCTTTGATGATCTTTCAACAATAAGGGAAAGTTGA 2979 0.388 MQAIWLMLLLVVNIALGNSDIDALLELKKGIKNDPFGLVLNSWDSKSLDSNQCPQNWYGILCSEGNVLSITLDNSGLVGEFNFLAISTLTMLHNLSLVNNNFTGSMLHISPMKSLKYLDLSLNKFAGSLPPSFVELRSLVYLNLSSNELSGTIPNLFHKLDQLKYLDFHGNSFSGDIMHIFDQMGSVLHVDLSKNRFSGTLDLGLGDVSFLSSIQHLNVSHNSLVGELFVHDGMPYLDNLEVFDASNNQLVGHIPSFTFVVSLRILRLACNQLTGSLPEALLKESSMVLSELDLSQNKLEGFIGSITSMTLRKLNISSNKLSGPLPLKVGHCAIIDLSNNVLSGNLSRIKYWGNYVEVIQLSTNFLSGTLPNETTQFLRLTSLKVSNNSLEGFLPPVLGTYPELNEIDLSLNRLSGFLLPTLFVSTKLTTLNLSYNEFSGPIPFQLPNNNPLVSAENFSLMSLDLSNNNLSGILSSKIKELHNLAYLNLCNNKLEGSIPNDLPDELRGFNVSFNNFSGAVPRNLLKFPESSFHPGNTMLLYPNSQLSPKDSSILGLRSHKNYFPRSVLITCLVTGVFVIAIMAAMVYYRIHQKKERTSKQDAKTSDIIQENTSPSNRRNLESIPPSQSDDTRNINPTLKKAKDPELVKNEEGASSPMSILSASNPSPSTSHQFENPSPLKVSSPDKLVGDLYLFDGSLMLTAEELSCAPAEVIGRSCHGTLYKATVESGHVLAVKWLREGITKGKKELAREIKKLGTIKHPSLVSLLGCYLGPKEHERLIISNYMNAYSLDIYLHEADKRNLHPLSVDERLRVAVEVARCLLYLHTEKAIPHGNLKSTNILIETPNRNVLLTDYSLHRILTAAGTSEQILNAGALGYRPPEFARSTKPCPSLKSDVYAFGVVLLELLSGRKSGEIVFGISGVVELTEWVRFLAEQGRSNQCFEKSLMENHNGEGPFMILDNMLKVALRCILPASERPDMKTVFDDLSTIRES 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04664 992 Gene3D Ribonuclease Inhibitor 455 545 IPR032675 -
Trre9g04664 992 PRINTS Leucine-rich repeat signature 460 473 - -
Trre9g04664 992 PRINTS Leucine-rich repeat signature 481 494 - -
Trre9g04664 992 MobiDBLite consensus disorder prediction 635 649 - -
Trre9g04664 992 Gene3D Phosphorylase Kinase; domain 1 713 785 - -
Trre9g04664 992 Pfam Leucine rich repeat N-terminal domain 18 63 IPR013210 -
Trre9g04664 992 ProSiteProfiles Protein kinase domain profile. 707 989 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04664 992 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 17 229 - -
Trre9g04664 992 Gene3D Transferase(Phosphotransferase) domain 1 786 992 - -
Trre9g04664 992 Gene3D Ribonuclease Inhibitor 356 454 IPR032675 -
Trre9g04664 992 FunFam Leucine-rich repeat receptor-like protein kinase 692 784 - -
Trre9g04664 992 MobiDBLite consensus disorder prediction 654 679 - -
Trre9g04664 992 MobiDBLite consensus disorder prediction 594 681 - -
Trre9g04664 992 Pfam Protein tyrosine and serine/threonine kinase 711 985 IPR001245 GO:0004672|GO:0006468
Trre9g04664 992 SUPERFAMILY Protein kinase-like (PK-like) 710 986 IPR011009 -
Trre9g04664 992 SUPERFAMILY L domain-like 335 527 - -
Trre9g04664 992 Pfam Leucine Rich Repeat 138 160 IPR001611 GO:0005515
Trre9g04664 992 Pfam Leucine Rich repeat 308 323 IPR001611 GO:0005515
Trre9g04664 992 Pfam Leucine Rich repeat 425 440 IPR001611 GO:0005515
Trre9g04664 992 Gene3D Ribonuclease Inhibitor 17 180 IPR032675 -
Trre9g04664 992 Gene3D Ribonuclease Inhibitor 181 355 IPR032675 -
Trre9g04664 992 MobiDBLite consensus disorder prediction 604 634 - -
Trre9g04664 992 ProSiteProfiles Leucine-rich repeat profile. 138 160 IPR001611 GO:0005515
Trre9g04664 992 SUPERFAMILY L domain-like 40 331 - -
Trre9g04664 992 PANTHER OS07G0626500 PROTEIN 5 989 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04664 Trre-Chr9 53603173 53606344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04664 69 989 Receptor kinase-like Gene Family AT5G07280 28.221 2.83e-70 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre9g04664 PK_Tyr_Ser-Thr 6.1e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04664 - - psat:127117920 1615.13