Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04657 ATGGAAGATCAACTAGTGAAAACAAGTGAAAATCAACAAAAACAATCCATAAGATGTAAAGCTGCGGTTTGTCGCAAACCAGGTGAACCATTGATTATTGAGGAAATCTTTGTTGCTCCACCAATGCCACATGAAGCTAGGATTCGTATTATTTGCACCTCTCTATGTCATAGCGATATCATTTTTTGGAACATGCAGGGTCCTCCTGCAATTTTTCCAAGGATTTTGGGTCATGAAGCAATTGGGGTTGTGGAAAGTGTTGGAGAGGATGTAACAGAACTTACAAAAGGAGACACTGTTATCCCAATCTTCATGGCGGATTGTGAAGAATGCATAGATTGCAAATCAACAAAGAGTAACCTTTGTTCAAAATTTCCTTTCGAGATTTCACCTTCGATGCTTAGATATGATACCAGTAGATTCACTGATCTAAACGGAGAGATCATACACCATTTTATCTTTGTCTCTAGTTTTAGTGAGTACACTGTGGTTGACATTGCCAATCTACTCAAGATTGATCCTGCAGTTCCTCCCAATAGGGCTTGCCTCCTCAGTTGTGGTGTATCAACAGGGGTAGGTGCTGCTTGGAAAACAGCAAATGTGGAGCCAGGGTCTACAGTAGCTATATTTGGACTTGGATGTATTGGATTAGCAGTTGCTGAGGGAGCTAGACTTTGTGGAGCAACTAGGATTATTGGTGTGGATATCAAGCCAGAAAAATTTGAAATTGGAAAGAAGTTTGGAATCACAGACTTTGTGCATGCTGGGGAATGTGAAAACAAATCTGTGAGCCAGATTATCATAGAGATGACTGGTGGGGGAGCAGATTATTGCTTTGAATGTGTTGGTATGGCATCATTGGTGCATGAAGCATATGCTTCATGTAGAAAGGGTTGGGGAAAAACAATTATGTTAGGAGTGGACAAGCCAGGATCTAAGGTTAGCATCAATAGTGGTGATATTCTTTTTCAAGGGAAGAGTCTCATGGGATCCATATTTGGAGGACTCAAACCCAAAACTGATGTACCAATTCTTTTTAAACGCTACATGGACAAGGAACTAAATTTGGATGAGTTTGTCACACATGAGGTGGAGTTTAAAGACATCAACAAAGCTTTTGATTTATTGGTTAAAGGAGAGTGTCTTCGATGTGTCATTTGGATGAACAAATAA 1173 0.3998 MEDQLVKTSENQQKQSIRCKAAVCRKPGEPLIIEEIFVAPPMPHEARIRIICTSLCHSDIIFWNMQGPPAIFPRILGHEAIGVVESVGEDVTELTKGDTVIPIFMADCEECIDCKSTKSNLCSKFPFEISPSMLRYDTSRFTDLNGEIIHHFIFVSSFSEYTVVDIANLLKIDPAVPPNRACLLSCGVSTGVGAAWKTANVEPGSTVAIFGLGCIGLAVAEGARLCGATRIIGVDIKPEKFEIGKKFGITDFVHAGECENKSVSQIIIEMTGGGADYCFECVGMASLVHEAYASCRKGWGKTIMLGVDKPGSKVSINSGDILFQGKSLMGSIFGGLKPKTDVPILFKRYMDKELNLDEFVTHEVEFKDINKAFDLLVKGECLRCVIWMNK 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04657 390 FunFam Alcohol dehydrogenase 6 22 203 - -
Trre9g04657 390 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 77 91 IPR002328 GO:0008270|GO:0016491
Trre9g04657 390 Pfam Zinc-binding dehydrogenase 215 335 IPR013149 -
Trre9g04657 390 FunFam S-(hydroxymethyl)glutathione dehydrogenase 191 331 - -
Trre9g04657 390 SUPERFAMILY GroES-like 13 199 IPR011032 -
Trre9g04657 390 PANTHER ALCOHOL DEHYDROGENASE 15 386 - -
Trre9g04657 390 SUPERFAMILY GroES-like 339 387 IPR011032 -
Trre9g04657 390 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 176 351 IPR036291 -
Trre9g04657 390 Gene3D - 191 331 - -
Trre9g04657 390 Gene3D - 22 383 - -
Trre9g04657 390 Pfam Alcohol dehydrogenase GroES-like domain 43 171 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04657 Trre-Chr9 53544341 53547331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04657 45 186 Monolignol Biosynthesis Gene Families AT4G37970 27.586 3.26e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04657 K00121 - gmx:100806887 663.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g04657 9 53544341 53547331 Trre9g04657 9 53544341 53547331 ECH
Trre5g02608 5 20411475 20414836 Trre9g04657 9 53544341 53547331 PCT