LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre9g04646	ATGGATGTTCATGTGATAACTATTGGAGAAGGAAGTGGAGCTATGGAAAATAATGGGCATGTTGAACTTGAAGTAAATGACGTTGGAAACTCTGGATCTCATGCTGAGGATGTGGTTTCTGAGCCGTATTTGGGTATGGTATTTGATTCTGAAGACTCTGCGAAAACTTTTTATAGTGAGTATGCTAGACGTTCGGGTTTCAGCTCCAAAGCTGGCTTGCATGGTCAGTTTAATGCTGATGGGACAAATATGTTTCGGGAGTTCGTGTGTAGCAGGGAAGGTTTGAAAAGAAGGATGACTGAAAGTTGCGGGGCAATGGTTAGGATAGAGCAAAAGGGTCAAAATAAGTGGGTTGTTACAAAATTTGTGAAGGAACATAATCATTCTACGTCGGTTTCTGATAAGGTGGAAAAACTTCAACCACAGAAACATTTTTCTAGTGTTGGAAGAACCATGCCTGAAACTTACAAAGGAGTGGGGCTTGTTCCAACTGGTGTCATGTATATATCTATTGATGGGCATCATGTTTCCTCTGAGAATAGTCACAAGATTAGGAATTTCCCTGCAATTGCTGCTGGTAAAACAAGTCATTCAGTTAAAAATCCCACATCGACGACTTATACTGTGAGGAAACCTATTCAAAAGAAAACATTAGGGAGGGATGCTCCGAACCTGCTGGAGTATTTTAAGAAAGTGCAAGCTGAAAACCCCGGCTTCTTCTATGCAATACAACTTGATGAAGATAATCGTATGTCTAATGTGTTTTGGGCAGATGCAAGATCAAGGACAGCTTACAGTCATTTTGGTGATGCAGTTACCCTGGACACAACACACAGAGCAAACCATTATAATGTGCCATATGCTCCATTCACTGGGATAAACCATCATGGCCAGATGATTTTGTTTGGTTGTGCACTCCTTTTTGATGATTCTGAAGCTTCTTTTAGTTGGCTCTTCAAGACATTTCTAGCAGCAATGAACGACAATCACCCTATCTCTATAACTACCGATCAGGACAGATCCATACAAACAGCAGTTTCAAAAGTTTTTCCTCAAGCACGGCACTGTATAAACAAGCGCTATGTCTTGCGAGAAGGCCACGAAAAGTTGGGCCATGTATGTCGCATGCATCCATATTTTCACTATGAACTTTATAATTGTATTAATTTGACAGAAACAATTGAGGAGTTTGATTTTTCTTGGAATTCTATCATCGATAAATATGAACTCAGAGGACACAATTGGCTTCGGTCCTTGTATAGTTCTCGCGATCAGTGGGTTCCAGCATATTTCCGTGATTCATTTTTTGCTGTTCTATCTCCTAATCAAGGATTTGAACCTTCTTTTTTAGACGGTTTTGTCAACCGGCATACAACATTACCAATGTTCTTTAGGCAGTATGAACTAGCTTTGGAGAGATGGTTTGAAAAGGAAATAGAATCAGATTTTGAGACAATTAGCACTACACCAGTTCTAAAGACACCTTCACCAATGGAGAATCAGGTTGCTAAGCTTTATACACAGAAAATATTTTTGAAGTTTCAAGAAGAGCTAGTGGAAACTTTTGCTTATACTGCCAACAGAGTCGAAGAGGATGGAGAAAATAGCATATTTAGAGCATTCTTTGTAGGCATGTTCTAA	1641	0.3955	MDVHVITIGEGSGAMENNGHVELEVNDVGNSGSHAEDVVSEPYLGMVFDSEDSAKTFYSEYARRSGFSSKAGLHGQFNADGTNMFREFVCSREGLKRRMTESCGAMVRIEQKGQNKWVVTKFVKEHNHSTSVSDKVEKLQPQKHFSSVGRTMPETYKGVGLVPTGVMYISIDGHHVSSENSHKIRNFPAIAAGKTSHSVKNPTSTTYTVRKPIQKKTLGRDAPNLLEYFKKVQAENPGFFYAIQLDEDNRMSNVFWADARSRTAYSHFGDAVTLDTTHRANHYNVPYAPFTGINHHGQMILFGCALLFDDSEASFSWLFKTFLAAMNDNHPISITTDQDRSIQTAVSKVFPQARHCINKRYVLREGHEKLGHVCRMHPYFHYELYNCINLTETIEEFDFSWNSIIDKYELRGHNWLRSLYSSRDQWVPAYFRDSFFAVLSPNQGFEPSFLDGFVNRHTTLPMFFRQYELALERWFEKEIESDFETISTTPVLKTPSPMENQVAKLYTQKIFLKFQEELVETFAYTANRVEEDGENSIFRAFFVGMF	546

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre9g04646	546	Pfam	MULE transposase domain	272	357	IPR018289	-
	Trre9g04646	546	Pfam	FAR1 DNA-binding domain	56	129	IPR004330	-
	Trre9g04646	546	PANTHER	PROTEIN FAR1-RELATED SEQUENCE 10-RELATED	33	533	IPR031052	GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre9g04646	Trre-Chr9	53486448	53488185	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Trre9g04646		MULE	3.7e-20	CL0219

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre9g04646	-		-	gmx:100807296	791.186