Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04617 ATGACTTATAGTACTAGTTTTAGCAGTAGAATTTTTACACTCTTGTTGTTAACTATTTCCTTCTTGCATGGTGCTACTACTCTTAACTCTGATGGTTTGACTTTATTGTCACTCTTGACACACTGGACTTCTGTTCCTAACCCCATCAGGTCAAGCTGGAAGGCTTCTGATTCCAATCCATGTTCATGGGTTGGTGTTCAATGTGACCATACTCACAATGTCATTTCCATTAACCTAACTGGTCTTGGAATTTTTGGTCAACTTGGATCTGAAATTGGAAACCTTTATAATTTGCAGACCCTTATGTTGTTAGGTAATGGTTTCTCAGGAAAAGTCCCTTTAGAGTTAAGTAACTGTAGTTTGCTTCAGCATTTAGATCTTGAAGGTAATAGATTCAGTGGAAATATACCATATAGTTTTAAAAAGTTGCAAAATTTACAGTTCATGAGATTGTCTTCCAATATGCTGAGTGGCGAAATTCCGGATTCTTTGTTTGAAATTCCTTCCCTTAAAGAAGTGAGCCTGCATAGTAATCTTCTTAGTGGTCCTATTCCAACCAATTTTGGAAACTTGACAAATCTGTTAAGATTGTATCTATATGGTAATCAGTTTTCAGGGACTATTCCTTCATCCATTGGTAATTGCAGTAAACTAGAGGACCTTGAATTGTCTTTCAACCGATTGAATGGTGAAATTCCAAACAGTATTTGGAGAATTCCAAGTCTTGTGAACATATTGGTTCACAATAACAGCCTCTCCGGGGAGCTACCATTTGAGATGACAAATCTCAAGTATCTAAAAAATATTTCATTGTTTGATAATCAGTTCTCAGGAGTCATACCGCAAAGTTTAGGAATCAACAGCAGCATAGTAAAGTTGGACTGTATGAATAACAAGTTTGGTGGTACTATCCCGCCAAATCTTTGCTTTGGAAAGAATTTGCGTGAACTCAATATGGGAATCAATCAATTTCAAGGTGGTGTACCTTCTGATGTAGGAAGATGTGCAACTCTGGTGAGGTTGTTTCTCAATGATAATAATTTCACCGGATCTCTTCCTTATTTTGAAAGTAATCTGAACCTGAAATACATGGACATGAGCAAGAACAATATCAGTGGACCGATTCCATCAAGTTTGGGAAATAGTTCAAATCTCACGTACATTAATTTGTCGAGGAACAAATTTGCAGGACCTATACCATCAGAGCTTGGAAACCTTGTGAATCTTGTGATTTTGGATCTTTCTCATAATAACTTGCAAGGTTCTTTGCCACTTCGGCTGTCAAATTGTACTAAATTGGATCGTTTTGATGTGGGATTCAATTTCCTAAATGGCTCATTCCCTTCAAGTTTGAGAAGTTGGACAAACATAACCACATTGATTTTAAGAGAAAATCACTTCACGGGAGGTATACCAGGGTTTTTGGCAGAACTTAGCAACCTTCGCGAGTTACAACTTGGTGGAAATTTATTTGGAGGAAAAATTCCTCGATCGATGGGAAAATTGCTTAATTTGTTCTATGGATTGAATCTGAGTGCTAATGGATTGATAGGTGACGTTCCTTCAGAAATCGGGAAGCTTGGACTGCTGCAAAGTCTGGATATATCGTTGAACAATTTATCCGGAAGCATAGATGCTCTTGAAGATCTTGTTTCATTAATTGAAGTCAATATTTCTTACAATCTCTTCAATGGTTCTGTACCAAAAGTTCTAATGAAGTTATTGTATTCCTCGCCATCTTCATTCATGGGCAATCCTCTCCTATGCGTCAGTTGTTTGAGTTGCATTAACACTAGTTATATAAGTCCATGTGTCCACAAATCAACTGATCACAAAGGTATCAGTAATGTTCAAATTGTGATGATAGAACTTGGATCCTCAATATTGATTTCTGCTATTCTGGTAATAATAATTAAAAGGCGTTTCCGTAGAAAGAATTCAGATACGAAAGATCTAAAGCATTGGTATTATGATGGTAGAGCTGGAATGATTGAAAAAGGAGCTGGAATGATTGGAGTCAGATATGCTCACGAATCGAACGTCTTAGGTGAAGAGAATCCAACCGCCCTTCCGAATCTAGTGTTGGAAGCTACTGAGAACCTAAGTGATCAGTATATTATTGGCAGAGGAGCACATGGTATTGTGTACAAAGCTTTACTTGGACAACATGTTTTTGCTGTGAAAAAGTTTGAATTCGCAAGGAGAAGGGAAAAGCAACTACGTATGATGAGCAAGGAAATTGAAGTGCTTGGAATGTATAAGCATCGAAACTTAATCAAATATGCAGACTATTGGATTGGAGCTGACTATGGTTTAGTCTTGTATGAATTCATAGAAAATGGAAGCCTTCATGATATTTTGCATGAAAAGAATCCCCCTCCACTCTTAACGTGGAATGTCAGGTTGAACATAGCTATCGGAATTGCTGAAGGACTAGCATATCTGCATAATAATTGTGACCCACCCATAGTGCATCGAGACATTAAACCAAAAAATATTCTTATTGATGACAATATGGAGCCAATTATAGCTGATTTTGGTACTGCCCTATACAGGAACTTGAATGAAGATTCTTATAGTCATTCAGAAACCAGGAAAATGCTTTCAACGATGGTTGTTGGTACCCCTGGCTATATTGCACCAGAGAATGCATATGCAGTAGTGCAGGGTAGGAAGTCTGATGTATATAGCTACGGCGTTGTTTTGCTCGAGCTAATAACCAGAAAGAAAGTGGTAATTCCCTCTTTGAATGATGAGGCAAATGTGACATCTTTAGTGAGCTGGGCTAGATCTGTATGGCTGGAAACTCGCAAAATTGATTACATTGCTGATTCATACCTTGCGAGTTTATGTCGCAATTCAACAGCACTGACCAAGCAAGTCACAGGAATGTTTTTATTGGCTTTGCAATGCACAGAGAAGCATCTAAGAAAGAGACCAACCATGAAATATGTCATTGGCTTGTATAAAAGGGACACGTTTAAGCGGTGTGATGAGGAGGAATACAGGGATATGATTGTCAACATTGATCACCATATACATGGAGAAAGCAGTAAGGCTGCAGCCCAAAGACAAAGAGAAGTTACATTTACTGATGGACTTTTAGTTAAACTGATGGGAAATGGTAGGATAATGGCTGAAAATGTTTTGGTCGTAGCTGCTATGAATGTTCCAAAAGTAACCTATGTTTGGCCTAGTTTAATTTTTCTTCCTTCTGTCAATGGTCCAATAGTAACCAAACCTTTCAATTGGTTTTTTCTCTCATGTTGGGGCCAATATATGCACCTTCATAAATCCTTGTTATATCAATCCAAATCATACTTCATAATTGCCAATAAAGTCAATGCCCTACAGGAACTAGTATTGGAGGCTACAGAGAACCTAAATGATCGTTATATTATTAGCAGAAAAGCACACTGTAGTGTGTATAAAGCCATACTTGGTCAACAAGTGTTTGGTTTGTATAATAGTGACTTGTTTAAGTGGAGTCGTGGCGAGGTCGAACATCGCGATGCAGTTGCAGCTAATCATAATGCAAGTGGCCTATTGTCATAA 3555 0.3786 MTYSTSFSSRIFTLLLLTISFLHGATTLNSDGLTLLSLLTHWTSVPNPIRSSWKASDSNPCSWVGVQCDHTHNVISINLTGLGIFGQLGSEIGNLYNLQTLMLLGNGFSGKVPLELSNCSLLQHLDLEGNRFSGNIPYSFKKLQNLQFMRLSSNMLSGEIPDSLFEIPSLKEVSLHSNLLSGPIPTNFGNLTNLLRLYLYGNQFSGTIPSSIGNCSKLEDLELSFNRLNGEIPNSIWRIPSLVNILVHNNSLSGELPFEMTNLKYLKNISLFDNQFSGVIPQSLGINSSIVKLDCMNNKFGGTIPPNLCFGKNLRELNMGINQFQGGVPSDVGRCATLVRLFLNDNNFTGSLPYFESNLNLKYMDMSKNNISGPIPSSLGNSSNLTYINLSRNKFAGPIPSELGNLVNLVILDLSHNNLQGSLPLRLSNCTKLDRFDVGFNFLNGSFPSSLRSWTNITTLILRENHFTGGIPGFLAELSNLRELQLGGNLFGGKIPRSMGKLLNLFYGLNLSANGLIGDVPSEIGKLGLLQSLDISLNNLSGSIDALEDLVSLIEVNISYNLFNGSVPKVLMKLLYSSPSSFMGNPLLCVSCLSCINTSYISPCVHKSTDHKGISNVQIVMIELGSSILISAILVIIIKRRFRRKNSDTKDLKHWYYDGRAGMIEKGAGMIGVRYAHESNVLGEENPTALPNLVLEATENLSDQYIIGRGAHGIVYKALLGQHVFAVKKFEFARRREKQLRMMSKEIEVLGMYKHRNLIKYADYWIGADYGLVLYEFIENGSLHDILHEKNPPPLLTWNVRLNIAIGIAEGLAYLHNNCDPPIVHRDIKPKNILIDDNMEPIIADFGTALYRNLNEDSYSHSETRKMLSTMVVGTPGYIAPENAYAVVQGRKSDVYSYGVVLLELITRKKVVIPSLNDEANVTSLVSWARSVWLETRKIDYIADSYLASLCRNSTALTKQVTGMFLLALQCTEKHLRKRPTMKYVIGLYKRDTFKRCDEEEYRDMIVNIDHHIHGESSKAAAQRQREVTFTDGLLVKLMGNGRIMAENVLVVAAMNVPKVTYVWPSLIFLPSVNGPIVTKPFNWFFLSCWGQYMHLHKSLLYQSKSYFIIANKVNALQELVLEATENLNDRYIISRKAHCSVYKAILGQQVFGLYNSDLFKWSRGEVEHRDAVAANHNASGLLS 1184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04617 1184 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 312 598 - -
Trre9g04617 1184 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Trre9g04617 1184 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 322 983 - -
Trre9g04617 1184 Gene3D Ribonuclease Inhibitor 361 600 IPR032675 -
Trre9g04617 1184 FunFam Os07g0541700 protein 778 870 - -
Trre9g04617 1184 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 27 186 - -
Trre9g04617 1184 SUPERFAMILY RNI-like 269 578 - -
Trre9g04617 1184 ProSiteProfiles Protein kinase domain profile. 701 994 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04617 1184 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 187 284 - -
Trre9g04617 1184 Gene3D Ribonuclease Inhibitor 287 360 IPR032675 -
Trre9g04617 1184 Pfam Protein kinase domain 705 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04617 1184 ProSitePatterns Serine/Threonine protein kinases active-site signature. 823 835 IPR008271 GO:0004672|GO:0006468
Trre9g04617 1184 Gene3D Transferase(Phosphotransferase) domain 1 778 1011 - -
Trre9g04617 1184 SUPERFAMILY Protein kinase-like (PK-like) 691 986 IPR011009 -
Trre9g04617 1184 Gene3D Ribonuclease Inhibitor 31 183 IPR032675 -
Trre9g04617 1184 Gene3D Ribonuclease Inhibitor 184 286 IPR032675 -
Trre9g04617 1184 SUPERFAMILY L domain-like 51 372 - -
Trre9g04617 1184 Pfam Leucine rich repeat 168 228 IPR001611 GO:0005515
Trre9g04617 1184 SMART serkin_6 701 995 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04617 1184 ProSitePatterns Protein kinases ATP-binding region signature. 707 729 IPR017441 GO:0005524
Trre9g04617 1184 Gene3D Phosphorylase Kinase; domain 1 687 777 - -
Trre9g04617 1184 SMART LRR_typ_2 406 430 IPR003591 -
Trre9g04617 1184 SMART LRR_typ_2 191 215 IPR003591 -
Trre9g04617 1184 SMART LRR_typ_2 478 502 IPR003591 -
Trre9g04617 1184 SMART LRR_typ_2 143 167 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04617 Trre-Chr9 53318192 53321871 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04617 381 569 Receptor kinase-like Gene Family AT1G73080 29.630 7.59e-11 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre9g04617 Pkinase 1.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04617 - - tpra:123924637 1946.4