Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04616 ATGACTAAAACTAGTTGTAACAGTAGAATTGTCAAACTCTTGTTGTTCATTATTTCCTTCTTGCAAGTTGGTTTTGCTCTTACCTCTGATGGTTTGACTTTGTTGTCACTCTTGAGAAATTGGACTTTTGTTCCTCCTCTCAATGATAATAATTTCACCGGTCTTCGTCCTGATTTTGAAAGTAATCTGAACCTGAAATACATGGACATGAGAAAGAACAATATCAATGGACCGGTAACATCAAGTTTGGGACATTACACAAACCTTACATACATTAATTTGTCATGGAACAAATTTTCAAGGCCAGTACCATCAGACCTTGGAAATCTTGTGAATCTTGTTCACAACAAATTGGAAGGTCCTTTTTCACTTAAACTGTCAAATTGTACTAAAATGGATCGTTTTGATGTGGGATTCAATTTCCTAAATGGCTCATTCCCTTCAAGTTTGAGAAGTTGGACAAACATAAGCACATTGGTATTAAGAGAAAATCACATCATAGGAGGTATCCCAATGTTTTTGGCAGCATTTGGTAACCTTCGCGAGTTACAACTTGGTGGAAATTTGATTGGAGGAAAAATTCCACGATCGGTAGGAACATTGCATAATCTGTTCTATGGATTGGATCTGAGTGCTAATAGATTGATAGGCGATATTCCTTCAGAAATTGTGTATCTAGAAATGCTGCAAAGTCTGTTGGACATATCTTTGAACAATTTAACAAGATACGCAGATGCTCTTGAAGGTCATGTTTCGTTAGCTTCGTTCAATACTTCTTACACTTCGTTCGTTAACAGGAAACTATTGAATTCCTCAGCCTTCATCATTCATAGGTATCACCATAGAAAGGAATTGAAAAGGGCCTCTGATATTAAGCAAATTTTTTTCGATGTAAGAGGTGAAGAAAGTTTTGAATTCACAAATGACAGTGATTACGAATTAACGATCTCAACTGAAAAGGAGATGTCTTCCCTTCAAGAGCAAGTGCTGGAGGCTACAGAGAACCTAAAAGATGAGTATATTATTGGGAGAGGAGCACATGGTATTGTGTACAAAGCCATAATAGGTCAACAGGTTTGTGCTGTAAAGAAGCTTGAATTTGGACGCAACAAGCAAAAGCGGTTAAGTATCATGCGCAACGAAATTAAAGTCCTCAGGATCATTAATCATCGAAATTTGATCAAATATTCTGGCTACTGGATTGGAGAAGACTATGGTTTAGTCTTGTTTGAGTTCATCGAAAATGGAAGCCTTCATGATATTTTCATTGAAAAGAAACCTCCCCCACTCTTAACATGGAACGTTCGGTGTAAGATAGCGGCTGGAATTGCTCAAGGATTAGCATATCTGCACTATGATTGCGTTCTACCAATACTGCACCGAGACCTCAAACCAAAGAACATACTTGTTAATGACAATATGGAACCTATTATAGCTGATTTTGGCACTGCCCTATGCAAGAAGATGTTTGAGGATTCTAATAGTTATTCTGAAACCAGGAAAATGCTTTTGCCGCATGTTGTTGGCACCCCTGGCTATATTGCACCAGAGAATGTATATGATATAGTGCCGGGAAGAATGTCTGACGTATATAGCTACGGAGTTGTTTTGCTCGAGCTAATAACCAGAAAGAAATTATTAGTTCCGTCTATAAATGATGAGGCGAACGAGATCCACATAGTGACCTGGGCTAGATCTGTAATGATGGAAACAGGCAAGGTAGAGAACATTGTTGATCCATACCTTGTAAGTGCATTTCCCAATTCAATATCACTAGCCAAGAAAGTCACTGCAGTGCTTTCATTGGCATTACAATGCACAGAGAAGGATCCACAAATGAGGCCGACCATGAAAAGTATTATTGACTTTTATAATAAAAACTTGTTTAATCCGAGGTGTGATGAGGTTCAATATGGTGGTCATGGACTTGTAATTAAATTGATGGGAAATGGTAAGATTCGGTCTGAAAAGGTTTTCGGGATCGCGAATTTAGTTGTTCCAAAAATAACCTATGCTTGGCCTAGTTTGATCTTTCTACCCTCTATCACTGGTCCAATACTTAACAAACCTTTCAACTGGTTTTTCCTATCACGTTGGGGTCAATATAGGCACCTGCAGATATCCTTGTATTCACAGCCCAAATCATACTATATAAAAACTGTTGTGAATATTGTATAA 2178 0.3788 MTKTSCNSRIVKLLLFIISFLQVGFALTSDGLTLLSLLRNWTFVPPLNDNNFTGLRPDFESNLNLKYMDMRKNNINGPVTSSLGHYTNLTYINLSWNKFSRPVPSDLGNLVNLVHNKLEGPFSLKLSNCTKMDRFDVGFNFLNGSFPSSLRSWTNISTLVLRENHIIGGIPMFLAAFGNLRELQLGGNLIGGKIPRSVGTLHNLFYGLDLSANRLIGDIPSEIVYLEMLQSLLDISLNNLTRYADALEGHVSLASFNTSYTSFVNRKLLNSSAFIIHRYHHRKELKRASDIKQIFFDVRGEESFEFTNDSDYELTISTEKEMSSLQEQVLEATENLKDEYIIGRGAHGIVYKAIIGQQVCAVKKLEFGRNKQKRLSIMRNEIKVLRIINHRNLIKYSGYWIGEDYGLVLFEFIENGSLHDIFIEKKPPPLLTWNVRCKIAAGIAQGLAYLHYDCVLPILHRDLKPKNILVNDNMEPIIADFGTALCKKMFEDSNSYSETRKMLLPHVVGTPGYIAPENVYDIVPGRMSDVYSYGVVLLELITRKKLLVPSINDEANEIHIVTWARSVMMETGKVENIVDPYLVSAFPNSISLAKKVTAVLSLALQCTEKDPQMRPTMKSIIDFYNKNLFNPRCDEVQYGGHGLVIKLMGNGKIRSEKVFGIANLVVPKITYAWPSLIFLPSITGPILNKPFNWFFLSRWGQYRHLQISLYSQPKSYYIKTVVNIV 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04616 725 Gene3D Transferase(Phosphotransferase) domain 1 413 632 - -
Trre9g04616 725 FunFam Os07g0541700 protein 413 504 - -
Trre9g04616 725 SMART serkin_6 336 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04616 725 Pfam Protein kinase domain 339 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04616 725 Gene3D Ribonuclease Inhibitor 29 273 IPR032675 -
Trre9g04616 725 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524
Trre9g04616 725 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Trre9g04616 725 SUPERFAMILY Protein kinase-like (PK-like) 322 622 IPR011009 -
Trre9g04616 725 ProSiteProfiles Protein kinase domain profile. 336 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04616 725 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 47 619 - -
Trre9g04616 725 Gene3D Phosphorylase Kinase; domain 1 315 412 - -
Trre9g04616 725 SUPERFAMILY L domain-like 6 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04616 Trre-Chr9 53314501 53317005 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04616 47 621 Receptor kinase-like Gene Family AT1G73080 40.188 5.15e-128 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre9g04616 Pkinase 2.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04616 - - tpra:123924637 702.975