Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04611 ATGGGAATCTGGGGTGTTACATCATTCCCTTCAAGTTTAAGAAGTTGGACAGGCATAACCACATTGGTATTAAGTGAAAATTACTTCACAGGAGGTATTCCAGGGTTTTTGGCAGAATTTAGCAACCTTCGCGAGTTACAACTTGGTGGAAATTTGTTTGGAGGAAAAATTCCTCGATCAATGGGAACAATGCGCAGTCTATTCTATGGATTGAATTTGAGTGCTAATAGATTGTCAGGTGACATTCCTGCAGAAATTGGGAAGCTAAAACTGCTCCAAAGTCTAGACATATCCTCGAACAATTTGACAGGAAGTATAGATGCTCTTGAAGGTCTTGTTTCATTAATTGAAATCAATATTTCTTACAATCTTTTCAATGGTTCTGTACCAACAGGTCTAATGAAGTTATTAAATTCCACACCATCATCATTCATGAGTAATCCCCTCCTTTGTTTCAGTTGTTTCAGTTGCATTGAAACTAGTTTTGTTAATCCATGTGTCTACAAATCAAGTAATCACAACAGAAGTATCAGTAATGTTCAAATTTTGATGATAGAACTTGGATCCTCGATATTTATTACTGTTTTGCTCCTAATAATAATTCGAATCTATCTCCTCAAAAGATCTAGGCAGGAATTCAAGATGTCGTGTTCCCCACTGGTCATAGTGTTGAAGGCTATGGCTAAACTATTTGATTGCTATAACTTTTGCAGAGGAATTGTGCATAAAACCCAGTTGGGGCGAGAATCGGAAATGGCTTCTGATCTTATGCAACAGTCTTATATTGAAAATGGAGGTACACTTAACCAACGGTCTGACAATGAAAGACGAGCTGCTCCGGCGTCCGATTTTAACAAATGGTCCTATTATGTTGAAAAAGGAGTTGGAAGGATTGGAGTCACATATGCTCGTGAATTCAATATCTCATGCAAAGAGAAGCCGCTTACCCTTAAGGATGTAGTGTTGGAGGCTACTGAAAATCTAAATCAACGGTATATTATTGGCAAGGGAGGACATGGTACTGTGTACAAAGCCATGATTGGTCAACAGGTTTTTGCTGTAAAGAAGGTTGAATTTGGACGGAACAAGCAAAAGCGGCTGAGTATCATACGCAATGAAATTGAAGTCCTTGGGATGTTTAAGCATCGAAATTTGTTGAAACATGCAGACTACTGGATTGGTGAGGAATATGGTTTAGTCTTATGTGAATTCATGAAAAATGGAAGCCTTCATGATATTTTGCATGAAATGAAACCACCACTACCCTTAACGTGGAATATTCGGTTTAAAATAGCTGTTGGAATTGCTCAAGGACTACTATATCTGCATTATGATTGTGTTCCACGAATAGTGCACCGAGACATAAAACCAAAGAACATACTTGTTGACGACAATATGGAGCCTATTATAGCTGATTTTGGCACTGCCCTATGCAAGAAGGTGTTTGAGGATTCTAATAGTCATTCTACAATCCGGAAAATGCTTTCGTCACACGTTGTTGGTACTCCTGGCTATATTGCACCGGAGAATGCATATGATATTGTCCCGGGAAGAAAGTCGGATGTATATAGCTATGGTGTTGTTTTGCTCGAGCTATTAACCAGAAAGAAACTGTTAGTCCCCTCTTTGAATAATGATGCAGAGGAGACCCCCTTAGTGATCTGGGCTAAATCTGTATGGCTGGAAACAAACAAAATTGAGAAGATTGTTGATCCGGACCTTGCAAGTGAATTTTCCAATTCAGTAGCAATAGCCAAGCAAGTTGCTGCAGTCCTTTCATTGGCATTCCGATGCATAGAGAAGGATCCAGGAAAGCGGCCAAACATGAAAGGTGTTATTAGAATTTATAATAAGAACTTGTTTAAGCTGAGGCGTGATGGGGTTCAATATGTCGATGTGCTTGCAATTAAACTGATGGGAAATGGTAAGTTGCAGACAGAAAAGTTTGTTCGGATAGCTTCTCTAATTGTTCCAAAAATAACCTATTCTCCGCGTAGTTTAATCTTCCTTTCCTCTATCACTGGTCCAATACTTACCAAACCTTTCAACTGGTTTTTCCTATTACGTTGGGGTCAATATAGGCATCTACAGAAATCCTTGTACTCACAGACCAAATCATACTACTCTATAACTATAAACACTGATAAAACGAAAGCTACTGTCAAAGTTAGCGAATAG 2178 0.3875 MGIWGVTSFPSSLRSWTGITTLVLSENYFTGGIPGFLAEFSNLRELQLGGNLFGGKIPRSMGTMRSLFYGLNLSANRLSGDIPAEIGKLKLLQSLDISSNNLTGSIDALEGLVSLIEINISYNLFNGSVPTGLMKLLNSTPSSFMSNPLLCFSCFSCIETSFVNPCVYKSSNHNRSISNVQILMIELGSSIFITVLLLIIIRIYLLKRSRQEFKMSCSPLVIVLKAMAKLFDCYNFCRGIVHKTQLGRESEMASDLMQQSYIENGGTLNQRSDNERRAAPASDFNKWSYYVEKGVGRIGVTYAREFNISCKEKPLTLKDVVLEATENLNQRYIIGKGGHGTVYKAMIGQQVFAVKKVEFGRNKQKRLSIIRNEIEVLGMFKHRNLLKHADYWIGEEYGLVLCEFMKNGSLHDILHEMKPPLPLTWNIRFKIAVGIAQGLLYLHYDCVPRIVHRDIKPKNILVDDNMEPIIADFGTALCKKVFEDSNSHSTIRKMLSSHVVGTPGYIAPENAYDIVPGRKSDVYSYGVVLLELLTRKKLLVPSLNNDAEETPLVIWAKSVWLETNKIEKIVDPDLASEFSNSVAIAKQVAAVLSLAFRCIEKDPGKRPNMKGVIRIYNKNLFKLRRDGVQYVDVLAIKLMGNGKLQTEKFVRIASLIVPKITYSPRSLIFLSSITGPILTKPFNWFFLLRWGQYRHLQKSLYSQTKSYYSITINTDKTKATVKVSE 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04611 725 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Trre9g04611 725 Gene3D Ribonuclease Inhibitor 5 166 IPR032675 -
Trre9g04611 725 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 8 610 - -
Trre9g04611 725 ProSiteProfiles Leucine-rich repeat profile. 91 113 IPR001611 GO:0005515
Trre9g04611 725 SUPERFAMILY Protein kinase-like (PK-like) 315 614 IPR011009 -
Trre9g04611 725 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 34 157 - -
Trre9g04611 725 Pfam Protein kinase domain 332 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04611 725 Gene3D Phosphorylase Kinase; domain 1 309 404 - -
Trre9g04611 725 ProSiteProfiles Protein kinase domain profile. 328 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04611 725 SMART serkin_6 328 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04611 725 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 405 621 - -
Trre9g04611 725 SUPERFAMILY L domain-like 6 151 - -
Trre9g04611 725 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524
Trre9g04611 725 Gene3D Transferase(Phosphotransferase) domain 1 405 629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04611 Trre-Chr9 53272277 53274560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04611 311 615 Receptor kinase-like Gene Family AT1G73080 44.231 1.84e-75 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre9g04611 Pkinase 1.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04611 - - mtr:11435193 1109.75