Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04602 ATGGTAGAATTCGATGTATCTATTGATGGTGATTCGAATGATGTTCATTCAACTGCTGGTAATACTAATGAAGCTGAAGATTCCAGCTATTCGGTATCCAGTGGGCAGGGTGGGTCGGATGATGATGAAGGTGATGATGATCATGAGGATGAGGATGAGGATGAGGATGACGAGGATGATGGCAATGCCAATGAATTTGATGATTCTGCATTTGTAGGCAATACGGTACGTATTAATTCTATGACTTCCGAAGAAATACGTGCTTTGGAATTTAGTAGTGTTGATGAGGCGTATGATTTCTATTACAAATATGGTAAATGCAAAGGTTTTTCTGTTAGGAAAAGTGATGATAAGAAGAAAAATGGGCCTGATGGTACTAAAATAATAACAAACAAGCTTTTTATATGCAGTAAACAAGGTTTAAGAGATAAGAAACACCTATGTAAGCTAAATAGGAAAAGAGTGCACCGACGTTTGACACGTTCTAACTGCAATGCTAGGTTTCGTGTGACATACAAAGCCAATAAGGGTAAATTTGTAGTGTCTGTGTTTGAAGAGACTCATAACCATGAGTTAACCCCATCTAGGAAGAAAGGCTGCATATTTGAATTTATGCATAATTTTGAGCAGGCTGTGAGAAACTATAGAAATAACGAACTTGTTGCCGACTTTACATCAAAGTTCTCAGAACCTGTGCTGACAACTCAACTAAAAAAAATTGAGAGCCATGCCGCTGAAATTTTTACAGCGCAAATTTTCAAAGATGTGAAAGATGAAATCATGAAGGCTGGTGAATTGATTGTTAGGCAGAAGAAGGAAATTGGAGATACAAAGTTTTATACACTGACTAAATATTGTGTGGATAAGTATGAAAGAACAGTTATTTATGATGGCGTTACATTCCAATGTTCGTGCCGGATGTTTGATTCAAAAGGACTTCCGTGTTCTCATATTTTTAATGTGATGAAGGAAGAACATGTTGATCGCATTCATAGCAGTTTGATATTGTCGCGATGGACCAAGGATGCCAAAATTGCTTATTTGAACATGGCAGATGTTAATGGTTCAATTGATTCCGATTCGATTGAGCTTGCTCGTTTCGGGGCATATTGTTCTGTGTTTACAGCATTTTGCAAAGATGTTTCTAAAAAGGAAGGTGTGTATGGGGACATTATGGAGGACCTCATGAATTTAAGAAACAAATATTGCGGTGTGGAGGATCCTATTGGAACACAGAAGTCGGATGTTCGTGATCCAGTCCCGGTTAAGGTTAAAGGTGCTCCAAAGAGAAAAAAGAATGAAGCAAAAGCTGTCAGGCGCTGTACAAAATGCAACAGTCCTAGTCACAATGCGAGGACTTGTTCGGAGAAAAAGAGAAACAAAAGTTGCAATGCTGAAAATAGTGTTCAAACCATATATTCAGAGGTACCGGAAGACCGTTGTGAAAGTAGCGTGCAAAAGAAAAATAAATTTTCAGAGCAACCGAAAGATCGTGGTGAAAGTAGTTTTCAAAATAAAAAGAGACGTTGTGAGCAACCGAAAGATAATATTGAAAGCAGTATGCCAAAGCAAAAGAAATGCTCGATGCAACAGCAAAATCGTCGCGCTAATGTGTCAACACCAGCACAAACGGATGTTACAAGTACAGTCGGACAATTGACTCCCATGTATGGATTTCAACCTATGATGACTTACTTACATCCGATAATTCAACCGACGGACGCACCACATGTACCACCCATACAACCTGGATACCAATTATATGGAATGAATGTTGGTCTGTTACAACAAGTGATTAACTCTGCTGATAAAAAAGATTGA 1821 0.3844 MVEFDVSIDGDSNDVHSTAGNTNEAEDSSYSVSSGQGGSDDDEGDDDHEDEDEDEDDEDDGNANEFDDSAFVGNTVRINSMTSEEIRALEFSSVDEAYDFYYKYGKCKGFSVRKSDDKKKNGPDGTKIITNKLFICSKQGLRDKKHLCKLNRKRVHRRLTRSNCNARFRVTYKANKGKFVVSVFEETHNHELTPSRKKGCIFEFMHNFEQAVRNYRNNELVADFTSKFSEPVLTTQLKKIESHAAEIFTAQIFKDVKDEIMKAGELIVRQKKEIGDTKFYTLTKYCVDKYERTVIYDGVTFQCSCRMFDSKGLPCSHIFNVMKEEHVDRIHSSLILSRWTKDAKIAYLNMADVNGSIDSDSIELARFGAYCSVFTAFCKDVSKKEGVYGDIMEDLMNLRNKYCGVEDPIGTQKSDVRDPVPVKVKGAPKRKKNEAKAVRRCTKCNSPSHNARTCSEKKRNKSCNAENSVQTIYSEVPEDRCESSVQKKNKFSEQPKDRGESSFQNKKRRCEQPKDNIESSMPKQKKCSMQQQNRRANVSTPAQTDVTSTVGQLTPMYGFQPMMTYLHPIIQPTDAPHVPPIQPGYQLYGMNVGLLQQVINSADKKD 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04602 606 MobiDBLite consensus disorder prediction 1 69 - -
Trre9g04602 606 MobiDBLite consensus disorder prediction 39 65 - -
Trre9g04602 606 Pfam SWIM zinc finger 296 318 IPR007527 GO:0008270
Trre9g04602 606 MobiDBLite consensus disorder prediction 480 521 - -
Trre9g04602 606 MobiDBLite consensus disorder prediction 522 547 - -
Trre9g04602 606 ProSiteProfiles Zinc finger SWIM-type profile. 290 326 IPR007527 GO:0008270
Trre9g04602 606 PANTHER OS01G0519700 PROTEIN 201 479 - -
Trre9g04602 606 SMART 26again6 301 328 IPR006564 GO:0008270
Trre9g04602 606 MobiDBLite consensus disorder prediction 11 38 - -
Trre9g04602 606 MobiDBLite consensus disorder prediction 414 460 - -
Trre9g04602 606 MobiDBLite consensus disorder prediction 477 547 - -
Trre9g04602 606 Pfam FAR1 DNA-binding domain 99 193 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04602 Trre-Chr9 53220502 53223328 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre9g04602 FAR1 1.5e-16 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04602 - - tpra:123887991 561.607