Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04599 ATGTCGGATGACATGCTTGTGCATTTTTCGTCGAATTCTTCTAACCAATCGGATCAGTCTCTGCCTACAAAGATTGCTAAGCTGGAAGCTCGAATGGTTGGAAAAGGTTCTTCCTCTGCTTCTCAGCAACAAGGCTGGTCTTCTGTTTCTTCAGCTGGGAAATTCAGTGGAGCGGCAGTTGAAGATTTGGTTGAACCTTGTACTTCAAGTGATTCTGACGACGATAATGGCAGGGAGTTCTTAATTCAAGCCAACACGCGTAAGCGCCCAAAACCTGAAAATGATGATGCCGATGTTTTTGAACGTTCTGAGGCTGTTACTGATGGAAGACAGACTAGTTTGGAGGCTGTGGAGACAAAAAATAACGTCGAAGCAAGTAGAAAGAGATCTGGTCGTGGAAGAGGGAATTCTGGTTCAGGTAGGGGTCGTGGATCCAAAAGTAATGATCAAACCAGATCACAAATTTCTCCACCAACAGTTTCGGCTTCAAATGGTCAGAATGAGAATGATGGTAGAGTCAAAGATCAGTTTCATAATGATAATAGTGCTTCATTAGAGGAGGAGATTACATCTTTACGTGCAAGAATTGTTGTGTTGGAGGAAGACTTGCGTAAAGCAAAGCTAGAATCCTCTGAGAATCAGAATGCTCGTCAGCAGTTGGAAATGGAACTGAAGGAACTGAAAGCTCTTGAACAACAAATGAAGCCTAAGAGAACAAAAATAATATCTGATTTGCTGATATCAGTTTCAAAAGCTGAAAGACAAGAAGCAAGGCTAAAAGTACGACAGGACTCATTGAGGCTTGGAAATGTTGGTGTAATCAGAGCTGGTACTATCATATCGGAGACCTGGGAAGATGGTCAGGCGTTAAAGGATCTTAATGCCCAGCTTAAACAACTAATAGAATCAAAAGAGGCAATTGAGCGCCAGCGGAAGCTATTCAAGAAAAAACAATCTGATAAGGGTGAAGGAATAGATGCAGAGGCTGGAATGCTGGAAGATATTCTCAGGCACGAGGAAATCTATAAGTGTCGACTAGCCAGCATTAAACGGGAAGAAGAAATTGTTTTGAGAGAGAGGGACCGCTACGAACTAGAGAAGGGTAGACTAATTCGTGAAATGAAACGCATACGGGATGAAGATGGTTCACGGTTCAACAACTTTCAGATTCTAAACCATCGTTATGCCCTTCTAAACCTTCTCGGAAAGGGAGGATTCAGCGAGGTGTACAAGGCTTTTGACTTGGTGGAGCATAGATATGTTGCCTGCAAACTTCATGGTTTAAATGCTCAATGGAGTGAAGAGAAGAAGCAAAGTTACATAAGGCATGCACTTCGAGAGTATAATATTCACAAGACATTGATTCACCCTCACATTGTTCGCTTATGGGATATCTTTGAGATTGATACGAATACATTCTGCACGGTTCTAGAGTATTGTAGTGGGAAAGATCTTGATGCTGTTCTTAAAGCAACGCCTACATTGCCCGAGAGGGAGGCTAGGGTCATTTTATCTCAGATTTTCCAAGGCCTTATTTACATGAATAAAAGAACACTGAAGATCATTCATTATGATTTAAAGCCTGGAAATGTTTTGTTTGATGAACTTGGGATTGCTAAAGTGACTGATTTTGGTCTTAGCAAGATAGTGGAGAATGATGTGGGATCCCAGGGTATGGAACTTACATCCCAGGGTGCTGGAACATATTGGTATTTGCCTCCTGAATGCTTTGAGCTCAGCAAGACACCACTTATATCATCCAAGGTTGATGTCTGGTCTGCGGGTATTTTGTTTTATCAAATGCTCTTTGGCAGACGTCCTTTCGGACATGACCAAACACAAGAGAGAATCCTCCGTGAAGACACAATTATTAAGGCACGCAAAGTTGAATTTCCCTCTAGGCCTACTGTTTCTAATGAGGCAAAGGATTTTATTCGGCGGTGTCTTACATATAACCAGGCCGAGAGGCCAGATGTATTAACCATCGCTCAAGATCCATATCTCGCTTACACAAAAAAGTAA 2022 0.4199 MSDDMLVHFSSNSSNQSDQSLPTKIAKLEARMVGKGSSSASQQQGWSSVSSAGKFSGAAVEDLVEPCTSSDSDDDNGREFLIQANTRKRPKPENDDADVFERSEAVTDGRQTSLEAVETKNNVEASRKRSGRGRGNSGSGRGRGSKSNDQTRSQISPPTVSASNGQNENDGRVKDQFHNDNSASLEEEITSLRARIVVLEEDLRKAKLESSENQNARQQLEMELKELKALEQQMKPKRTKIISDLLISVSKAERQEARLKVRQDSLRLGNVGVIRAGTIISETWEDGQALKDLNAQLKQLIESKEAIERQRKLFKKKQSDKGEGIDAEAGMLEDILRHEEIYKCRLASIKREEEIVLRERDRYELEKGRLIREMKRIRDEDGSRFNNFQILNHRYALLNLLGKGGFSEVYKAFDLVEHRYVACKLHGLNAQWSEEKKQSYIRHALREYNIHKTLIHPHIVRLWDIFEIDTNTFCTVLEYCSGKDLDAVLKATPTLPEREARVILSQIFQGLIYMNKRTLKIIHYDLKPGNVLFDELGIAKVTDFGLSKIVENDVGSQGMELTSQGAGTYWYLPPECFELSKTPLISSKVDVWSAGILFYQMLFGRRPFGHDQTQERILREDTIIKARKVEFPSRPTVSNEAKDFIRRCLTYNQAERPDVLTIAQDPYLAYTKK 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04599 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 521 533 IPR008271 GO:0004672|GO:0006468
Trre9g04599 673 ProSiteProfiles Protein kinase domain profile. 395 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04599 673 Pfam Protein kinase domain 396 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04599 673 MobiDBLite consensus disorder prediction 1 23 - -
Trre9g04599 673 FunFam Serine/threonine-protein kinase TOUSLED 386 673 - -
Trre9g04599 673 CDD STKc_TLK 394 667 - -
Trre9g04599 673 SMART serkin_6 395 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04599 673 PANTHER MIXED LINEAGE PROTEIN KINASE 11 672 - -
Trre9g04599 673 MobiDBLite consensus disorder prediction 1 177 - -
Trre9g04599 673 Coils Coil 346 380 - -
Trre9g04599 673 Gene3D Transferase(Phosphotransferase) domain 1 386 673 - -
Trre9g04599 673 MobiDBLite consensus disorder prediction 35 54 - -
Trre9g04599 673 MobiDBLite consensus disorder prediction 140 170 - -
Trre9g04599 673 ProSitePatterns Protein kinases ATP-binding region signature. 401 424 IPR017441 GO:0005524
Trre9g04599 673 SUPERFAMILY Protein kinase-like (PK-like) 387 669 IPR011009 -
Trre9g04599 673 MobiDBLite consensus disorder prediction 71 105 - -
Trre9g04599 673 Coils Coil 290 317 - -
Trre9g04599 673 MobiDBLite consensus disorder prediction 106 120 - -
Trre9g04599 673 Coils Coil 182 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04599 Trre-Chr9 53203070 53209721 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04599 378 673 MAP Kinase Kinase Kinase AT3G13530 26.756 7.35e-28 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TLK Trre9g04599 Pkinase 5e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04599 K08864 - gmx:100789927 1095.49