Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04598 ATGTCGGATGACATGCTTGTGCATTTTTCGTCGAATTCTTCTAACCAATCGGATCAGTCTCTGCCTACAAAGATTGCTAAGCTGGAAGCTCGAATGGTTGGAAAAGGTTCTTCCTCTGCTTCTCAGCAACAAGGCTGGTCTTCTGTTTCTTCAGCTGGGAAATTCAGTGGAGCGGCAGTTGAAGATTTGGTTGAACCTTGTACTTCAAGTGATTCTGACGACGATAATGGCAGGGAGTTCTTAATTCAAGCCAACACGCGTAAGCGCCCAAAACCTGAAAATGATGATGCCGATGTTTTTGAACGTTCTGAGGCTGTTACTGATGGAAGACAGACTAGTTTGGAGGCTGTGGAGACAAAAAATAACGTCGAAGCAAGTAGAAAGAGATCTGGTCGTGGAAGAGGGAATTCTGGTTCAGGTAGGGGTCGTGGATCCAAAAGTAATGATCAAACCAGATCACAAATTTCTCCACCAACAGTTTCGGCTTCAAATGGTCAGAATGAGAATGTATTGCATAAAGATGGTAGAGTCAAAGATCAGTTTCATAATGATAATAGTGCTTCATTAGAGGAGGAGATTACATCTTTACGTGCAAGAATTGTTGTGTTGGAGGAAGACTTGCGTAAAGCAAAGCTAGAATCCTCTGAGAATCAGAATGCTCGTCAGCAGTTGGAAATGGAACTGAAGGAACTGAAAGCTCTTGAACAACAAATGAAGCCTAAGAGAACAAAAATAATATCTGATTTGCTGATATCAGTTTCAAAAGCTGAAAGACAAGAAGCAAGGCTAAAAGTACGACAGGACTCATTGAGGCTTGGAAATGTTGGTGTAATCAGAGCTGGTACTATCATATCGGAGACCTGGGAAGATGGTCAGGCGTTAAAGGATCTTAATGCCCAGCTTAAACAACTAATAGAATCAAAAGAGGCAATTGAGCGCCAGCGGAAGCTATTCAAGAAAAAACAATCTGATAAGGGTGAAGGAATAGATGCAGAGGCTGGAATGCTGGAAGATATTCTCAGGCACGAGGAAATCTATAAGTGTCGACTAGCCAGCATTAAACGGGAAGAAGAAATTGTTTTGAGAGAGAGGGACCGCTACGAACTAGAGAAGGGTAGACTAATTCGTGAAATGAAACGCATACGGGATGAAGATGGTTCACGGTTCAACAACTTTCAGATTCTAAACCATCGTTATGCCCTTCTAAACCTTCTCGGAAAGGGAGGATTCAGCGAGGTGTACAAGGCTTTTGACTTGGTGGAGCATAGATATGTTGCCTGCAAACTTCATGGTTTAAATGCTCAATGGAGTGAAGAGAAGAAGCAAAGTTACATAAGGCATGCACTTCGAGAGTATAATATTCACAAGACATTGATTCACCCTCACATTGTTCGCTTATGGGATATCTTTGAGATTGATACGAATACATTCTGCACGGTTCTAGAGTATTGTAGTGGGAAAGATCTTGATGCTGTTCTTAAAGCAACGCCTACATTGCCCGAGAGGGAGGCTAGGGTCATTTTATCTCAGATTTTCCAAGGCCTTATTTACATGAATAAAAGAACACTGAAGATCATTCATTATGATTTAAAGCCTGGAAATGTTTTGTTTGATGAACTTGGGATTGCTAAAGTGACTGATTTTGGTCTTAGCAAGATAGTGGAGAATGATGTGGGATCCCAGGGTATGGAACTTACATCCCAGGGTGCTGGAACATATTGGTATTTGCCTCCTGAATGCTTTGAGCTCAGCAAGACACCACTTATATCATCCAAGGTTGATGTCTGGTCTGCGGGTATTTTGTTTTATCAAATGCTCTTTGGCAGACGTCCTTTCGGACATGACCAAACACAAGAGAGAATCCTCCGTGAAGACACAATTATTAAGGCACGCAAAGTTGAATTTCCCTCTAGGCCTACTGTTTCTAATGAGGCAAAGGATTTTATTCGGCGGTGTCTTACATATAACCAGGCCGAGAGGCCAGATGTATTAACCATCGCTCAAGATCCATATCTCGCTTACACAAAAAAGTAA 2034 0.4189 MSDDMLVHFSSNSSNQSDQSLPTKIAKLEARMVGKGSSSASQQQGWSSVSSAGKFSGAAVEDLVEPCTSSDSDDDNGREFLIQANTRKRPKPENDDADVFERSEAVTDGRQTSLEAVETKNNVEASRKRSGRGRGNSGSGRGRGSKSNDQTRSQISPPTVSASNGQNENVLHKDGRVKDQFHNDNSASLEEEITSLRARIVVLEEDLRKAKLESSENQNARQQLEMELKELKALEQQMKPKRTKIISDLLISVSKAERQEARLKVRQDSLRLGNVGVIRAGTIISETWEDGQALKDLNAQLKQLIESKEAIERQRKLFKKKQSDKGEGIDAEAGMLEDILRHEEIYKCRLASIKREEEIVLRERDRYELEKGRLIREMKRIRDEDGSRFNNFQILNHRYALLNLLGKGGFSEVYKAFDLVEHRYVACKLHGLNAQWSEEKKQSYIRHALREYNIHKTLIHPHIVRLWDIFEIDTNTFCTVLEYCSGKDLDAVLKATPTLPEREARVILSQIFQGLIYMNKRTLKIIHYDLKPGNVLFDELGIAKVTDFGLSKIVENDVGSQGMELTSQGAGTYWYLPPECFELSKTPLISSKVDVWSAGILFYQMLFGRRPFGHDQTQERILREDTIIKARKVEFPSRPTVSNEAKDFIRRCLTYNQAERPDVLTIAQDPYLAYTKK 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04598 677 MobiDBLite consensus disorder prediction 1 23 - -
Trre9g04598 677 ProSitePatterns Protein kinases ATP-binding region signature. 405 428 IPR017441 GO:0005524
Trre9g04598 677 Coils Coil 350 384 - -
Trre9g04598 677 MobiDBLite consensus disorder prediction 1 169 - -
Trre9g04598 677 ProSiteProfiles Protein kinase domain profile. 399 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04598 677 Pfam Protein kinase domain 400 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04598 677 MobiDBLite consensus disorder prediction 140 169 - -
Trre9g04598 677 CDD STKc_TLK 398 671 - -
Trre9g04598 677 Coils Coil 294 321 - -
Trre9g04598 677 Coils Coil 186 237 - -
Trre9g04598 677 MobiDBLite consensus disorder prediction 35 54 - -
Trre9g04598 677 SUPERFAMILY Protein kinase-like (PK-like) 391 673 IPR011009 -
Trre9g04598 677 FunFam Serine/threonine-protein kinase TOUSLED 390 677 - -
Trre9g04598 677 MobiDBLite consensus disorder prediction 71 105 - -
Trre9g04598 677 MobiDBLite consensus disorder prediction 106 120 - -
Trre9g04598 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 525 537 IPR008271 GO:0004672|GO:0006468
Trre9g04598 677 PANTHER MIXED LINEAGE PROTEIN KINASE 11 676 - -
Trre9g04598 677 Gene3D Transferase(Phosphotransferase) domain 1 390 677 - -
Trre9g04598 677 SMART serkin_6 399 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04598 Trre-Chr9 53203070 53209721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04598 382 677 MAP Kinase Kinase Kinase AT3G13530 26.756 6.49e-28 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TLK Trre9g04598 Pkinase 5.1e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04598 K08864 - gmx:100789927 1107.43