Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04580 ATGGAGTTTATGTTCCCTTGCCCCCTAGGTCATTTAACTAGAAGTTTAGTTACTGCTGGAATATCTATTGGAGGAATATACATGGTTCAGTTATCATCAATTTGTATATATGTTATATACTTCAGAAAGAAGAATGTAGATAAGTCTAAATTGACACCAGAAGATTTAATGGCACCTTCAACTAAAGATGACATATCTGATAAAGATTCCAATGCAAATACTGGATCAAAATTTATTGTGGTGGACAAATCATCGGAATTTTCGTACGAAGAACTAGCCATGGCTACAGATAACTTCAGTTTGGCTAACAAAATTGGTCAAGGTGGTTTTGGAGAGGTCTACTATGGAAAATTGAGAGGCAAGAAAGCTGCAATAAAAAAGATGACGATGCTATCTACAAGAGAATTTCTTTCTGAAATGAAAGTCTTAACAAGTGTTCACCACTGCAATCTGGTACGTTTGATTGGTTATTGTATTGAGGGGTCTCTATTCCTTGCGTATGAATACATGGACAATGGAAACTTAAGCCAACATCTGCATAATTCAGAGAAAGAACCTTTGACATGGTCTACCAGGTTGCAAATTGCTCTGGATGTAGCAAGAGGACTCGAGTATATTCATGATCATTCCGTGCCTGTATATATCCATCGCGACATAAAATCAGATAATATTTTATTAAATGAAAACTTCAATGGGAAGATTGCAGATTTTGGAATGACCAAACTGTCTGATGTTGCAAGTTCAACAGATAACACTGATCATGTCGCTGGCACATTTGGTTACATGCCGCCTGAAAATGCATATGGCCATATTTCTCGCAAGATAGATGTATATGCTTTTGGAGTTGTTCTGTACGAACTAATTTCTGCTAAAGCAGCTGTGGTCGAAATTGATAAACGAAGTACCGAGTTCAAGAGCCTTGAGATTAAGACCAATGATTCTATTGATGAATACAAGAGCCTTGTAGCTTTGTTTGATGAAGTTATTGAACAAGAGGTAGATCCTATGGAAGGTCTAAGAAAGATGGTGGATCCAAGGCTAGGAGATAACTATTCAATTGATTCCATTAACAAGATGGCACAGCTGGCAAAGGCTTGCATAAACCGAAATCCGAAACAACGTCCAAGAATGGGAGATGTTGTAGTTTCTCTAATGAAACTAAATTTTACAATTGATGATGGAAGTAGGAGAGATGGTGCAGCATATTGA 1209 0.3722 MEFMFPCPLGHLTRSLVTAGISIGGIYMVQLSSICIYVIYFRKKNVDKSKLTPEDLMAPSTKDDISDKDSNANTGSKFIVVDKSSEFSYEELAMATDNFSLANKIGQGGFGEVYYGKLRGKKAAIKKMTMLSTREFLSEMKVLTSVHHCNLVRLIGYCIEGSLFLAYEYMDNGNLSQHLHNSEKEPLTWSTRLQIALDVARGLEYIHDHSVPVYIHRDIKSDNILLNENFNGKIADFGMTKLSDVASSTDNTDHVAGTFGYMPPENAYGHISRKIDVYAFGVVLYELISAKAAVVEIDKRSTEFKSLEIKTNDSIDEYKSLVALFDEVIEQEVDPMEGLRKMVDPRLGDNYSIDSINKMAQLAKACINRNPKQRPRMGDVVVSLMKLNFTIDDGSRRDGAAY 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04580 402 ProSiteProfiles Protein kinase domain profile. 99 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04580 402 Pfam Protein tyrosine and serine/threonine kinase 101 382 IPR001245 GO:0004672|GO:0006468
Trre9g04580 402 ProSitePatterns Protein kinases ATP-binding region signature. 105 127 IPR017441 GO:0005524
Trre9g04580 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Trre9g04580 402 FunFam PTI1-like tyrosine-protein kinase 3 170 397 - -
Trre9g04580 402 SMART serkin_6 99 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04580 402 SUPERFAMILY Protein kinase-like (PK-like) 73 385 IPR011009 -
Trre9g04580 402 FunFam LysM receptor kinase 2 78 169 - -
Trre9g04580 402 Gene3D Transferase(Phosphotransferase) domain 1 170 396 - -
Trre9g04580 402 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 14 392 IPR044812 GO:0019199|GO:0045087
Trre9g04580 402 Gene3D Phosphorylase Kinase; domain 1 69 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04580 Trre-Chr9 53053430 53055787 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04580 17 387 Receptor kinase-like Gene Family AT3G21630 54.474 8.39e-134 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre9g04580 PK_Tyr_Ser-Thr 7.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04580 - K13429 tpra:123920651 555.444