Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04572 ATGAAGCTTTCAACTCAAGATGGTAGTGGAGAATTTGAAACTTCAGGATCTAGTGGGACTGGTAGTGCTGCAGGCCTTACAGGTATTATGGTGGCAAAGTCAACAGAGTTTTCATATCAAGAACTAGCCAAAGCTACAAATAACTTCAACTTGGATCATAAAATTGGTCAAGGTGGATTTGGAGCTGTCTATTATGCAGAACTTAGAGGCGAGAAAACAGCGATTAAGAAGATGGACGTACAAGCGTCTACAGAATTTCTTTGTGAGTTGAAGGTCTTAACACATGTTCATCACTTGAATCTGGTGCGGTTGATTGGATATTGCGTTGAGGGATCACTTTTCCTTGTATATGAACATATTGACAATGGAAACTTGGGTCAATATTTGCACGGAATAGGTAAAGAACCATTACCATGGTCAAGTAGAGTTCAAATTGCGCTAGATTCAGCAAGAGGCCTTGAATACATTCATGAACACACTGTGCCTGTGTATATCCATCGCGATGTAAAATCAGCAAATATATTGATAGACAAAAACTTGCGCGGAAAGGTTGCAGATTTTGGCTTAACCAAACTTATTGAAGTCGGAAGCTCCACACTTCACACTCGTCTAGTTGGAACTTTCGGATACATGCCCCCAGAGTATGCTCAATATGGCGATGTTTCTCCGAAAATAGATGTATATGCTTTTGGAGTTGTTCTTTTTGAACTTATTTCTGCAAAGAATGCTGTTCTCAGGACAGGTGAAACCGTTGCGGAATCAAAGGGTCTTGTAGCCTTGTTTGGAGAAGCACTTAATCAGATTGATCCTTTAGAAGGTCTTCGCAAACTAGTCGATCCTAGGCTTAAAGAAAACTATCCTATTGAAGATGTTCTCAAGATGGCTGAACTTGGAAGAGCATGTACAAGAGACAATCCACTACTACGTCCAAGTATGAGATCTATAGTTGTTGCTCTTATGACACTTTCATCACCAACTGAAGATTGTGATGATGACACTTCCTATGAAAATCAAACTATCATAAATCTATTGTCAGTGAGATGA 1044 0.3966 MKLSTQDGSGEFETSGSSGTGSAAGLTGIMVAKSTEFSYQELAKATNNFNLDHKIGQGGFGAVYYAELRGEKTAIKKMDVQASTEFLCELKVLTHVHHLNLVRLIGYCVEGSLFLVYEHIDNGNLGQYLHGIGKEPLPWSSRVQIALDSARGLEYIHEHTVPVYIHRDVKSANILIDKNLRGKVADFGLTKLIEVGSSTLHTRLVGTFGYMPPEYAQYGDVSPKIDVYAFGVVLFELISAKNAVLRTGETVAESKGLVALFGEALNQIDPLEGLRKLVDPRLKENYPIEDVLKMAELGRACTRDNPLLRPSMRSIVVALMTLSSPTEDCDDDTSYENQTIINLLSVR 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04572 347 FunFam LysM receptor kinase 2 28 119 - -
Trre9g04572 347 Gene3D Transferase(Phosphotransferase) domain 1 120 343 - -
Trre9g04572 347 ProSiteProfiles Protein kinase domain profile. 49 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04572 347 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Trre9g04572 347 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 15 332 IPR044812 GO:0019199|GO:0045087
Trre9g04572 347 SMART serkin_6 49 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04572 347 MobiDBLite consensus disorder prediction 1 21 - -
Trre9g04572 347 FunFam PTI1-like tyrosine-protein kinase 3 120 333 - -
Trre9g04572 347 Pfam Protein tyrosine and serine/threonine kinase 50 317 IPR001245 GO:0004672|GO:0006468
Trre9g04572 347 ProSitePatterns Protein kinases ATP-binding region signature. 55 77 IPR017441 GO:0005524
Trre9g04572 347 SUPERFAMILY Protein kinase-like (PK-like) 31 319 IPR011009 -
Trre9g04572 347 PIRSF ILK 12 336 - -
Trre9g04572 347 Gene3D Phosphorylase Kinase; domain 1 29 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04572 Trre-Chr9 52997491 52999740 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04572 9 347 Receptor kinase-like Gene Family AT3G21630 65.782 9.02e-158 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre9g04572 PK_Tyr_Ser-Thr 3.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04572 - K13429 tpra:123921801 644.81