Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04571 ATGAAGCTTTCAACTCAAGATGGTAATGGTAGTGGAGAATTTGAAACTTCAGGATCTAGTGGGACTGGTAGTGCTGCAGGCCTTACAGGTATTATGGTGGCAAAGTCAACAGAGTTTTCATATCAAGAACTAGCCAAAGCTACAAATAACTTCAACTTGGATCATAAAATTGGTCAAGGTGGATTTGGAGCTGTCTATTATGCAGAACTTAGAGGCGAGAAAACAGCGATTAAGAAGATGGACGTACAAGCGTCTACAGAATTTCTTTGTGAGTTGAAGGTCTTAACACATGTTCATCACTTGAATCTGGTGCGGTTGATTGGATATTGCGTTGAGGGATCACTTTTCCTTGTATATGAACATATTGACAATGGAAACTTGGGTCAATATTTGCACGGAATAGGTAAAGAACCATTACCATGGTCAAGTAGAGTTCAAATTGCGCTAGATTCAGCAAGAGGCCTTGAATACATTCATGAACACACTGTGCCTGTGTATATCCATCGCGATGTAAAATCAGCAAATATATTGATAGACAAAAACTTGCGCGGAAAGGTTGCAGATTTTGGCTTAACCAAACTTATTGAAGTCGGAAGCTCCACACTTCACACTCGTCTAGTTGGAACTTTCGGATACATGCCCCCAGAGTATGCTCAATATGGCGATGTTTCTCCGAAAATAGATGTATATGCTTTTGGAGTTGTTCTTTTTGAACTTATTTCTGCAAAGAATGCTGTTCTCAGGACAGGTGAAACCGTTGCGGAATCAAAGGGTCTTGTAGCCTTGTTTGGAGAAGCACTTAATCAGATTGATCCTTTAGAAGGTCTTCGCAAACTAGTCGATCCTAGGCTTAAAGAAAACTATCCTATTGAAGATGTTCTCAAGATGGCTGAACTTGGAAGAGCATGTACAAGAGACAATCCACTACTACGTCCAAGTATGAGATCTATAGTTGTTGCTCTTATGACACTTTCATCACCAACTGAAGATTGTGATGATGACACTTCCTATGAAAATCAAACTATCATAAATCTATTGTCAGTGAGATGA 1050 0.3962 MKLSTQDGNGSGEFETSGSSGTGSAAGLTGIMVAKSTEFSYQELAKATNNFNLDHKIGQGGFGAVYYAELRGEKTAIKKMDVQASTEFLCELKVLTHVHHLNLVRLIGYCVEGSLFLVYEHIDNGNLGQYLHGIGKEPLPWSSRVQIALDSARGLEYIHEHTVPVYIHRDVKSANILIDKNLRGKVADFGLTKLIEVGSSTLHTRLVGTFGYMPPEYAQYGDVSPKIDVYAFGVVLFELISAKNAVLRTGETVAESKGLVALFGEALNQIDPLEGLRKLVDPRLKENYPIEDVLKMAELGRACTRDNPLLRPSMRSIVVALMTLSSPTEDCDDDTSYENQTIINLLSVR 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04571 349 ProSitePatterns Protein kinases ATP-binding region signature. 57 79 IPR017441 GO:0005524
Trre9g04571 349 ProSiteProfiles Protein kinase domain profile. 51 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04571 349 MobiDBLite consensus disorder prediction 1 23 - -
Trre9g04571 349 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Trre9g04571 349 Gene3D Transferase(Phosphotransferase) domain 1 122 345 - -
Trre9g04571 349 FunFam LysM receptor kinase 2 30 121 - -
Trre9g04571 349 FunFam PTI1-like tyrosine-protein kinase 3 122 335 - -
Trre9g04571 349 Pfam Protein tyrosine and serine/threonine kinase 52 319 IPR001245 GO:0004672|GO:0006468
Trre9g04571 349 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 17 334 IPR044812 GO:0019199|GO:0045087
Trre9g04571 349 SUPERFAMILY Protein kinase-like (PK-like) 33 321 IPR011009 -
Trre9g04571 349 SMART serkin_6 51 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04571 349 Gene3D Phosphorylase Kinase; domain 1 31 121 - -
Trre9g04571 349 PIRSF ILK 14 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04571 Trre-Chr9 52997491 52999740 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04571 1 349 Receptor kinase-like Gene Family AT3G21630 64.857 3.35e-158 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre9g04571 PK_Tyr_Ser-Thr 3.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04571 - K13429 tpra:123921801 639.802