Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04569 ATGCAATCAAAGATTGTTAAAAATTCTCCTGAGGTTATAATGAGCTATAATAAAGACATAGTATTTAGTAATGATAATCTTTTTACATATTTTAGAATCAACATTCCATTCCCATGTGAATGTATTGGAGGCGAATTTCTCGGTCATGTGTTTGAATATTCTGCTTCTGAAGGAGATACTTATGATTTGATTGCAAATACTTATTATGCAAGTTTGACAACTGTTGAGGTTTTGAAAAAGTTCAATAGTTATGATCCAAATCATATACCAGTTAAGGCTAAGGTTAATGTTACTGTCAATTGTTCTTGTGGGAATAGTCAGATTTCAAAAGATTATGGCTTGTTTATAACCTATCCACTAAGGGCTAGTGATACTCTTGAGAAGATTGCAAGTGATTCTAAACTTGATGAAGGGGTGATACAAAGTTTTAATTCTGGTGTCAATTTTAGCAAAGGGAGTGGGATAGTGTTCATTCCAGGAAGAGATCAAAATGGAGATTATGTTCCCTTGTATCCTAGAACAGGTTTGACTTTCAGAATTGATATTATGATGATTAATTTCAGCTTGATCCATGTTCACAGAAAAGGTCTTGCTAAGGGTGCAGCTATAGGTATAACTATAGCAGGAATATTTGGACTTCTATTAATAGTTATATGCATATATGTCAAATACTTCCAAAAGAAGGAAGAAGAGAAAGTTAAACTTCCACAAACTTCTATTGCACTTTCAACTCAAGATGCCTCTGGTAGTGGAGAATATGAAACATCGGGATCCAGTGTGCCTGGTACTGGTAGTACTGCTGGTCTTACAGGCATTATGGTCGCAAAGTCAACGGAATTTTCGTATCAAGAACTAGCTAAGGCAACAAATAACTTCAGCTTGGATCATAAAATTGGTCAAGGTGGATTTGGAGCTGTCTATTATGCAGAACTTAGAGGCGAGAAAACAGCGATTAAGAAGATGGACGTACAAGCGTCGACAGAATTTCTTTGTGAGTTGAAGGTCTTAACACATGTACATCACTTGAATCTGGTGAGGTTGATTGGATATTGCGTCGAGGGATCACTTTTCCTTGTATACGAACATATCGACAATGGAAACTTGGGTGAATATTTGCATGGTATAGGTAGAGAACCATTACCATGGTCTAGTAGAGTGCAAATTGCTCTAGATTCAGCAAGAGGTCTCGAATACATTCATGAACACACAGTTCCTGTGTATATCCATCGTGATGTAAAATCCGCAAATATATTGATAGACAAAAACTTACGCGGAAAGGTCGCGGATTTTGGCTTGACAAAACTTATTGAAGTTGGAAACTCCACACTTCACACTCGTCTTGTTGGAACTTTTGGTTACATGCCACCAGAATATGCGCAATATGGTGATGTATCTCCAAAAATAGATGTGTATGCTTTTGGAGTTGTTCTTTATGAACTTATTTCTGCAAAGAATGCTATTCTAAAAACAGGTGAATCAGTTGCTGAATCAAAGGGTCTTGTAGTCTTGTTTGAAGAAGCACTTAATCAAATTGATCCTTTGGAAGGTATTCGCAAATTGGTGGATTCGAGACTCAAAGATAACTATCCAATGGATTCCGTTCTAAAGATGGTTGAACTTGCAAGAGGATGTACTAGAGACAATCCACTACTACGTCCAAGTATGAGATCTATAGTTGTTGCTCTTATGACACTTTCATCACCAACTGAAGATTGTTATTATGACACTTCCTATGAAAATCAATCTCTCATAAATATATTATCAGTGAGATGA 1773 0.3638 MQSKIVKNSPEVIMSYNKDIVFSNDNLFTYFRINIPFPCECIGGEFLGHVFEYSASEGDTYDLIANTYYASLTTVEVLKKFNSYDPNHIPVKAKVNVTVNCSCGNSQISKDYGLFITYPLRASDTLEKIASDSKLDEGVIQSFNSGVNFSKGSGIVFIPGRDQNGDYVPLYPRTGLTFRIDIMMINFSLIHVHRKGLAKGAAIGITIAGIFGLLLIVICIYVKYFQKKEEEKVKLPQTSIALSTQDASGSGEYETSGSSVPGTGSTAGLTGIMVAKSTEFSYQELAKATNNFSLDHKIGQGGFGAVYYAELRGEKTAIKKMDVQASTEFLCELKVLTHVHHLNLVRLIGYCVEGSLFLVYEHIDNGNLGEYLHGIGREPLPWSSRVQIALDSARGLEYIHEHTVPVYIHRDVKSANILIDKNLRGKVADFGLTKLIEVGNSTLHTRLVGTFGYMPPEYAQYGDVSPKIDVYAFGVVLYELISAKNAILKTGESVAESKGLVVLFEEALNQIDPLEGIRKLVDSRLKDNYPMDSVLKMVELARGCTRDNPLLRPSMRSIVVALMTLSSPTEDCYYDTSYENQSLINILSVR 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04569 590 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 6 573 IPR044812 GO:0019199|GO:0045087
Trre9g04569 590 ProSitePatterns Protein kinases ATP-binding region signature. 298 320 IPR017441 GO:0005524
Trre9g04569 590 SUPERFAMILY Protein kinase-like (PK-like) 273 562 IPR011009 -
Trre9g04569 590 ProSiteProfiles Protein kinase domain profile. 292 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04569 590 SMART serkin_6 292 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04569 590 FunFam LysM receptor kinase 2 271 362 - -
Trre9g04569 590 Pfam Protein tyrosine and serine/threonine kinase 293 561 IPR001245 GO:0004672|GO:0006468
Trre9g04569 590 Gene3D Transferase(Phosphotransferase) domain 1 363 584 - -
Trre9g04569 590 ProSitePatterns Serine/Threonine protein kinases active-site signature. 407 419 IPR008271 GO:0004672|GO:0006468
Trre9g04569 590 Gene3D Phosphorylase Kinase; domain 1 272 362 - -
Trre9g04569 590 FunFam PTI1-like tyrosine-protein kinase 3 363 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04569 Trre-Chr9 52982484 52986343 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04569 13 590 Receptor kinase-like Gene Family AT3G21630 54.828 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre9g04569 PK_Tyr_Ser-Thr 9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04569 - K13429 tpra:123921801 937.947