Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04568 ATGCAATCAAAGATTGTTAAAAATTCTCCTGAGGTTATAATGAGCTATAATAAAGACATAGTATTTAGTAATGATAATCTTTTTACATATTTTAGAATCAACATTCCATTCCCATGTGAATGTATTGGAGGCGAATTTCTCGGTCATGTGTTTGAATATTCTGCTTCTGAAGGAGATACTTATGATTTGATTGCAAATACTTATTATGCAAGTTTGACAACTGTTGAGGTTTTGAAAAAGTTCAATAGTTATGATCCAAATCATATACCAGTTAAGGCTAAGGTTAATGTTACTGTCAATTGTTCTTGTGGGAATAGTCAGATTTCAAAAGATTATGGCTTGTTTATAACCTATCCACTAAGGGCTAGTGATACTCTTGAGAAGATTGCAAGTGATTCTAAACTTGATGAAGGGGTGATACAAAGTTTTAATTCTGGTGTCAATTTTAGCAAAGGGAGTGGGATAGTGTTCATTCCAGGAAGAGATCAAAATGGAGATTATGTTCCCTTGTATCCTAGAACAGGTTTGACTTTCAGAATTGATATTATGATGATTAATTTCAGCTTGATCCATGTTCACAGAAAAGGTCTTGCTAAGGGTGCAGCTATAGGTATAACTATAGCAGGAATATTTGGACTTCTATTAATAGTTATATGCATATATGTCAAATACTTCCAAAAGAAGGAAGAAGAGAAAGTTAAACTTCCACAAACTTCTATTGCACTTTCAACTCAAGATGGTAATGCCTCTGGTAGTGGAGAATATGAAACATCGGGATCCAGTGTGCCTGGTACTGGTAGTACTGCTGGTCTTACAGGCATTATGGTCGCAAAGTCAACGGAATTTTCGTATCAAGAACTAGCTAAGGCAACAAATAACTTCAGCTTGGATCATAAAATTGGTCAAGGTGGATTTGGAGCTGTCTATTATGCAGAACTTAGAGGCGAGAAAACAGCGATTAAGAAGATGGACGTACAAGCGTCGACAGAATTTCTTTGTGAGTTGAAGGTCTTAACACATGTACATCACTTGAATCTGGTGAGGTTGATTGGATATTGCGTCGAGGGATCACTTTTCCTTGTATACGAACATATCGACAATGGAAACTTGGGTGAATATTTGCATGGTATAGGTAGAGAACCATTACCATGGTCTAGTAGAGTGCAAATTGCTCTAGATTCAGCAAGAGGTCTCGAATACATTCATGAACACACAGTTCCTGTGTATATCCATCGTGATGTAAAATCCGCAAATATATTGATAGACAAAAACTTACGCGGAAAGGTCGCGGATTTTGGCTTGACAAAACTTATTGAAGTTGGAAACTCCACACTTCACACTCGTCTTGTTGGAACTTTTGGTTACATGCCACCAGAATATGCGCAATATGGTGATGTATCTCCAAAAATAGATGTGTATGCTTTTGGAGTTGTTCTTTATGAACTTATTTCTGCAAAGAATGCTATTCTAAAAACAGGTGAATCAGTTGCTGAATCAAAGGGTCTTGTAGTCTTGTTTGAAGAAGCACTTAATCAAATTGATCCTTTGGAAGGTATTCGCAAATTGGTGGATTCGAGACTCAAAGATAACTATCCAATGGATTCCGTTCTAAAGATGGTTGAACTTGCAAGAGGATGTACTAGAGACAATCCACTACTACGTCCAAGTATGAGATCTATAGTTGTTGCTCTTATGACACTTTCATCACCAACTGAAGATTGTTATTATGACACTTCCTATGAAAATCAATCTCTCATAAATATATTATCAGTGAGATGA 1779 0.3637 MQSKIVKNSPEVIMSYNKDIVFSNDNLFTYFRINIPFPCECIGGEFLGHVFEYSASEGDTYDLIANTYYASLTTVEVLKKFNSYDPNHIPVKAKVNVTVNCSCGNSQISKDYGLFITYPLRASDTLEKIASDSKLDEGVIQSFNSGVNFSKGSGIVFIPGRDQNGDYVPLYPRTGLTFRIDIMMINFSLIHVHRKGLAKGAAIGITIAGIFGLLLIVICIYVKYFQKKEEEKVKLPQTSIALSTQDGNASGSGEYETSGSSVPGTGSTAGLTGIMVAKSTEFSYQELAKATNNFSLDHKIGQGGFGAVYYAELRGEKTAIKKMDVQASTEFLCELKVLTHVHHLNLVRLIGYCVEGSLFLVYEHIDNGNLGEYLHGIGREPLPWSSRVQIALDSARGLEYIHEHTVPVYIHRDVKSANILIDKNLRGKVADFGLTKLIEVGNSTLHTRLVGTFGYMPPEYAQYGDVSPKIDVYAFGVVLYELISAKNAILKTGESVAESKGLVVLFEEALNQIDPLEGIRKLVDSRLKDNYPMDSVLKMVELARGCTRDNPLLRPSMRSIVVALMTLSSPTEDCYYDTSYENQSLINILSVR 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04568 592 Pfam Protein tyrosine and serine/threonine kinase 295 563 IPR001245 GO:0004672|GO:0006468
Trre9g04568 592 Gene3D Transferase(Phosphotransferase) domain 1 365 586 - -
Trre9g04568 592 FunFam PTI1-like tyrosine-protein kinase 3 365 578 - -
Trre9g04568 592 ProSiteProfiles Protein kinase domain profile. 294 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04568 592 MobiDBLite consensus disorder prediction 244 266 - -
Trre9g04568 592 SUPERFAMILY Protein kinase-like (PK-like) 275 564 IPR011009 -
Trre9g04568 592 ProSitePatterns Serine/Threonine protein kinases active-site signature. 409 421 IPR008271 GO:0004672|GO:0006468
Trre9g04568 592 FunFam LysM receptor kinase 2 273 364 - -
Trre9g04568 592 SMART serkin_6 294 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04568 592 ProSitePatterns Protein kinases ATP-binding region signature. 300 322 IPR017441 GO:0005524
Trre9g04568 592 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 6 575 IPR044812 GO:0019199|GO:0045087
Trre9g04568 592 Gene3D Phosphorylase Kinase; domain 1 274 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04568 Trre-Chr9 52982484 52986343 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04568 13 592 Receptor kinase-like Gene Family AT3G21630 54.905 0.0 619
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre9g04568 PK_Tyr_Ser-Thr 9.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04568 - K13429 tpra:123921801 938.332