Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04566 ATGAAGCTCAAAAATAGGTTCATATTGTTGATTCTGTTTCTGCATTGTGTTATTTTTAAAGTGGAATCAAAATGTGTAAAAGGGTGTGATGTAGCTTTAGCTTCATACTATATTATGCCTTTAGTTCAACTCTCAAATATAACAACCTTTATGCAATCAAAGATTGTTAAAAATTCTCCTGAGGTTATAATGAGCTATAATAAAGACATAGTATTTAGTAATGATAATCTTTTTACATATTTTAGAATCAACATTCCATTCCCATGTGAATGTATTGGAGGCGAATTTCTCGGTCATGTGTTTGAATATTCTGCTTCTGAAGGAGATACTTATGATTTGATTGCAAATACTTATTATGCAAGTTTGACAACTGTTGAGGTTTTGAAAAAGTTCAATAGTTATGATCCAAATCATATACCAGTTAAGGCTAAGGTTAATGTTACTGTCAATTGTTCTTGTGGGAATAGTCAGATTTCAAAAGATTATGGCTTGTTTATAACCTATCCACTAAGGGCTAGTGATACTCTTGAGAAGATTGCAAGTGATTCTAAACTTGATGAAGGGGTGATACAAAGTTTTAATTCTGGTGTCAATTTTAGCAAAGGGAGTGGGATAGTGTTCATTCCAGGAAGAGATCAAAATGGAGATTATGTTCCCTTGTATCCTAGCTTTCTAACATTCATTTTTCCCTTTTGCAGAACAGGTCTTGCTAAGGGTGCAGCTATAGGTATAACTATAGCAGGAATATTTGGACTTCTATTAATAGTTATATGCATATATGTCAAATACTTCCAAAAGAAGGAAGAAGAGAAAGTTAAACTTCCACAAACTTCTATTGCACTTTCAACTCAAGATGCCTCTGGTAGTGGAGAATATGAAACATCGGGATCCAGTGTGCCTGGTACTGGTAGTACTGCTGGTCTTACAGGCATTATGGTCGCAAAGTCAACGGAATTTTCGTATCAAGAACTAGCTAAGGCAACAAATAACTTCAGCTTGGATCATAAAATTGGTCAAGGTGGATTTGGAGCTGTCTATTATGCAGAACTTAGAGGCGAGAAAACAGCGATTAAGAAGATGGACGTACAAGCGTCGACAGAATTTCTTTGTGAGTTGAAGGTCTTAACACATGTACATCACTTGAATCTGGTGAGGTTGATTGGATATTGCGTCGAGGGATCACTTTTCCTTGTATACGAACATATCGACAATGGAAACTTGGGTGAATATTTGCATGGTATAGGTAGAGAACCATTACCATGGTCTAGTAGAGTGCAAATTGCTCTAGATTCAGCAAGAGGTCTCGAATACATTCATGAACACACAGTTCCTGTGTATATCCATCGTGATGTAAAATCCGCAAATATATTGATAGACAAAAACTTACGCGGAAAGGTCGCGGATTTTGGCTTGACAAAACTTATTGAAGTTGGAAACTCCACACTTCACACTCGTCTTGTTGGAACTTTTGGTTACATGCCACCAGAATATGCGCAATATGGTGATGTATCTCCAAAAATAGATGTGTATGCTTTTGGAGTTGTTCTTTATGAACTTATTTCTGCAAAGAATGCTATTCTAAAAACAGGTGAATCAGTTGCTGAATCAAAGGGTCTTGTAGTCTTGTTTGAAGAAGCACTTAATCAAATTGATCCTTTGGAAGGTATTCGCAAATTGGTGGATTCGAGACTCAAAGATAACTATCCAATGGATTCCGTTCTAAAGATGGTTGAACTTGCAAGAGGATGTACTAGAGACAATCCACTACTACGTCCAAGTATGAGATCTATAGTTGTTGCTCTTATGACACTTTCATCACCAACTGAAGATTGTTATTATGACACTTCCTATGAAAATCAATCTCTCATAAATATATTATCAGTGAGATGA 1890 0.3603 MKLKNRFILLILFLHCVIFKVESKCVKGCDVALASYYIMPLVQLSNITTFMQSKIVKNSPEVIMSYNKDIVFSNDNLFTYFRINIPFPCECIGGEFLGHVFEYSASEGDTYDLIANTYYASLTTVEVLKKFNSYDPNHIPVKAKVNVTVNCSCGNSQISKDYGLFITYPLRASDTLEKIASDSKLDEGVIQSFNSGVNFSKGSGIVFIPGRDQNGDYVPLYPSFLTFIFPFCRTGLAKGAAIGITIAGIFGLLLIVICIYVKYFQKKEEEKVKLPQTSIALSTQDASGSGEYETSGSSVPGTGSTAGLTGIMVAKSTEFSYQELAKATNNFSLDHKIGQGGFGAVYYAELRGEKTAIKKMDVQASTEFLCELKVLTHVHHLNLVRLIGYCVEGSLFLVYEHIDNGNLGEYLHGIGREPLPWSSRVQIALDSARGLEYIHEHTVPVYIHRDVKSANILIDKNLRGKVADFGLTKLIEVGNSTLHTRLVGTFGYMPPEYAQYGDVSPKIDVYAFGVVLYELISAKNAILKTGESVAESKGLVVLFEEALNQIDPLEGIRKLVDSRLKDNYPMDSVLKMVELARGCTRDNPLLRPSMRSIVVALMTLSSPTEDCYYDTSYENQSLINILSVR 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04566 629 FunFam PTI1-like tyrosine-protein kinase 3 402 615 - -
Trre9g04566 629 Gene3D Transferase(Phosphotransferase) domain 1 402 623 - -
Trre9g04566 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672|GO:0006468
Trre9g04566 629 FunFam LysM receptor kinase 2 310 401 - -
Trre9g04566 629 Gene3D Phosphorylase Kinase; domain 1 311 401 - -
Trre9g04566 629 ProSiteProfiles Protein kinase domain profile. 331 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04566 629 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 8 612 IPR044812 GO:0019199|GO:0045087
Trre9g04566 629 SUPERFAMILY Protein kinase-like (PK-like) 312 601 IPR011009 -
Trre9g04566 629 ProSitePatterns Protein kinases ATP-binding region signature. 337 359 IPR017441 GO:0005524
Trre9g04566 629 SMART serkin_6 331 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04566 629 Pfam Protein tyrosine and serine/threonine kinase 332 600 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04566 Trre-Chr9 52982334 52986343 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04566 1 629 Receptor kinase-like Gene Family AT3G21630 54.416 0.0 655
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre9g04566 PK_Tyr_Ser-Thr 1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04566 - K13429 tpra:123921801 1013.83