Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04564 ATGAAACTCAAAAATGTGTTACAGTTACTATTATTCTTTGTATTTCTTGATTGTGTTTTATTCAAAGTAGAATCAAAGTGTGTGAAAGGGTGTGATGTAGCTTTAGCTTCATACTATATCATGCCTTTAGTTGAACTATCAAATATAACAACCTTTATGCAATCAAAGATTGCTAAAATTTCTCCTAAGGTTATAATGAGCTATAATAAAGACATAGTATTCAGTAATGCTAATCTTTTTTCATATTTTAGAATCAACATTCCATTCCCATGTGAATGTATTGGAGGCGAATTTCTTGGTCATGTGTTTGAGTATTCGGTTTCTGAAGGAGATACTTATGATTTGATTGCAAATACTTATTATGCAAGTTTGACAAGTGTTGAGGTCTTGAAAAAGTACAATAGTTATGATCCAAATCATATACCTGCTAAGGCTAAGGTTAATGTTACTGTTAATTGTTCTTGTGGAAATAGTCAGATTTCAAAAGATTATGGCTTGTTTATTACCTATCCACTTAATCCTAAGGATACTCTTCAAAAAATTGCAAGTGATTCTAAACTTGATGAAGGGGTGATACAGAGTTACAATTCTGGTGTCAATTTTAGCAAAGGGAGTGGGATTGTGTTCATTCCAGGAAGAGATCAAAATGGAGATTATGTTCCCTTGTATCCTAGATACTTCCAAAAGAAGAAACAAGCGAAAACTAAACTTCCCGAAACTTCTATGGTGTCTTCATCTCAAGATGTTGATAAGAATACTAATGGTGAAAAAGGAGCCAAATTAATTGTGGTAGACAAATCACCTGAATTTTCATACAAAGAACTAGCCAATGCTACTGATAACTTCAGTTTGGCTAACAAAATTGGTCAAGGTGGTTTTGGAGAGGTCTACTTTGGAGAGCTGAGAGGCAAGAAAACTGCAATAAAAAAGATGAAGATCCAAGCAAGAAGAGAATTTCTTGCTGAACTCAAAGTCTTAACAAGTGTTCATCACTGGAACCTGGTACACTTGATAGGATATTGTGTTGAGGGATCTCTATTCCTTGTGTATGAATTCATAGACAATGGAAACTTAAGCCAACATCTACATAATTCAGCGAAAGAGCCGATGACATGGTCTACAAGGGTGCAAATTGCTCTTGATGTTGCGAGAGGCCTCGAGTATATTCATGATCATTCAGTTCCTGTATATATCCACCGTGACATTAAATCAGATAACATTTTATTAAATGAAAACTTCACTGCGAAGATTGCTGATTTTGGATTAACCAAGCTGACTGATATTGCAAGTTCAACAGATAAAACTGATCATATGGCAGGCACATTTGGTTACATGCCACCTGAAAATGTATATGGACGTATTTCTCGCAAGATAGATGTATATGCTTTTGGAGTTGTTCTTTATGAACTAATTTCTGCTAAAACGGCTGTGATCAAGATTGATATAATCGAGTACGAGTTCAAGAGCCTTGAGATTAAGACCGATGAATCTGTTGATGAATACAAGAGCCTTGTAGCTTTGTTTGATGAAGTTATTGATGAAGAAGGAAATCCTATAGAAGAAGGTCTAAGAAAACTGGTCGATCCAAGGCTAGGAGATAACTATTCAATTGATTCCATCAACAAGATGACACAACTTGCCAAGGCTTGCATAAACCGAGATCCGAAACAACGTCCAACAATGAGATCTGTTGTAGTTTCTCTTATGAAACTAAATTCAACAGTTTATGATGGTAGTAGGACAGATAGTGCATCATTGAGTCTTACTATGGAGCATGACTCAAATTCAAATGAAATTCCAATGTGA 1806 0.3516 MKLKNVLQLLLFFVFLDCVLFKVESKCVKGCDVALASYYIMPLVELSNITTFMQSKIAKISPKVIMSYNKDIVFSNANLFSYFRINIPFPCECIGGEFLGHVFEYSVSEGDTYDLIANTYYASLTSVEVLKKYNSYDPNHIPAKAKVNVTVNCSCGNSQISKDYGLFITYPLNPKDTLQKIASDSKLDEGVIQSYNSGVNFSKGSGIVFIPGRDQNGDYVPLYPRYFQKKKQAKTKLPETSMVSSSQDVDKNTNGEKGAKLIVVDKSPEFSYKELANATDNFSLANKIGQGGFGEVYFGELRGKKTAIKKMKIQARREFLAELKVLTSVHHWNLVHLIGYCVEGSLFLVYEFIDNGNLSQHLHNSAKEPMTWSTRVQIALDVARGLEYIHDHSVPVYIHRDIKSDNILLNENFTAKIADFGLTKLTDIASSTDKTDHMAGTFGYMPPENVYGRISRKIDVYAFGVVLYELISAKTAVIKIDIIEYEFKSLEIKTDESVDEYKSLVALFDEVIDEEGNPIEEGLRKLVDPRLGDNYSIDSINKMTQLAKACINRDPKQRPTMRSVVVSLMKLNSTVYDGSRTDSASLSLTMEHDSNSNEIPM 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04564 601 Gene3D Phosphorylase Kinase; domain 1 262 352 - -
Trre9g04564 601 SUPERFAMILY Protein kinase-like (PK-like) 262 568 IPR011009 -
Trre9g04564 601 FunFam LysM receptor kinase 2 261 352 - -
Trre9g04564 601 ProSiteProfiles Protein kinase domain profile. 282 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04564 601 FunFam PTI1-like tyrosine-protein kinase 3 353 582 - -
Trre9g04564 601 SMART serkin_6 282 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04564 601 Pfam LysM domain 105 143 IPR018392 -
Trre9g04564 601 Gene3D Transferase(Phosphotransferase) domain 1 353 591 - -
Trre9g04564 601 ProSitePatterns Protein kinases ATP-binding region signature. 288 310 IPR017441 GO:0005524
Trre9g04564 601 Pfam Protein tyrosine and serine/threonine kinase 284 474 IPR001245 GO:0004672|GO:0006468
Trre9g04564 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 397 409 IPR008271 GO:0004672|GO:0006468
Trre9g04564 601 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 9 580 IPR044812 GO:0019199|GO:0045087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04564 Trre-Chr9 52956486 52959636 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04564 1 574 Receptor kinase-like Gene Family AT3G21630 48.622 0.0 571
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre9g04564 PK_Tyr_Ser-Thr 1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04564 - K13429 tpra:123920651 983.015