Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04563 ATGAAGGTTAATGTTACTGTTAACTGTTCATTTGGGAACAGAGAGGTTTCCACAGATTATGGTTTGTTCATCACATACCCTCTTTATTCTAAGGGAACTTTTGAGTCTATTGCAAACGATACCAAGCTGGATGCTGAGTTGCTGAAGAGGTACAATTTCAGCCAAGGAAGAGGTTCCATTTTTATAACAGACACAAATGGAAGTTATTTTCCCTTTCACTCTAATACAATAGGAAGTGGGGCTATTGCCGGATTATCTGTTGGAGTACTAGCAGGGATTTTACTGTTGTCATTTTGTGTGTATATTAAATATTACCTAAAGAAGAAAGTATGGAAGAAAAATTTGACATTGGATGATTCCAAGATGATGAACTCAGATCAAATCGGTACTGAAATCACAGACCTTATGGTGGAAAAATCACATGAGTTTTCATACATAGAACTTTCCATTGCCACAAATAAGTTCAGCATGTCTAATAAAATTGGTGAAGGTGGTTTTGGAGAAGTCTTTTATGCAGAGCTTAGAGGCCAGAAAGCCGCTATCAAGAAGATGAAGAAGAAAGCTTCCAAAGAATTTTGTGCTGAATTGAAAGTCTTAACTCGTGTTCATCACTTGAACCTAGTAGGTTTGATTGGATATTGTGTTGAAGGTTTTCTCTTCCTTGTCTATGAATACATTGACAATGGAAACTTAAGTCAAAATCTTCGCGATTTAGAAAGAGAACCTTTGACGTGGTCTACAAGGATGCAAATCGCGCTGGATTCAGCTAGATGTCTTGAATATATTCATGAACATACAGAACATGTATATATCCATCGCGACATAAAGTCAGAAAATATTTTATTAGACCAAAGTTTTCGTGCAAAGGTTGCAGATTTTGGATTATCCAAGCTTGCGGATGTTGACCATTCAACTTCATCTAATATAATCGCAGAGGGTACATTCGGTTACATGCCACCAGAATACGCATGTGGTGGTGTCGCCCCTTCCTCGAAAATAGATGTATATGCCTTTGGAGTTGTTCTATATGAACTTATTTCTGCTAAAGGAGCTGTTATCCGTGATGGACCTGAAGTAAAAGGCCTTGTAGCTTTGTTTGATGAAGTGCTTGGTCATGAGCCAGATCCAACAGATGGTCTAAAACCTCTGGTGGATCCTAGACTTGGAGATAACTATTCGATTGATTCAATTTATAAGATGTCACAAATAGCCAAAGCATGTACAATGAAGGATCCACAACTACGTCCAACAAAGGAAGGAGATACTTATGATTTGATTGCAAATACTTATTATACAAGTTTGACAACTGTTGAGGTTTTAAAATACTTCAATAGTTATGATCCAAATCATATACCAGTTAAGGCTAAGGTTAATGTTACTGTCAATTGTTCTTGTGGGAATAGTCAGATTTCAAAAGATTATGGCTTGTTTATTACCTATCCACTAAGGGCTAGTGATACTCTTGAGAAGATTGCAAGTCATTCTAAACTTGATGAAGGGTTGGTTAAGAGTTTCAATTATGGTGTCAATTTTAGCAAAGGGAGTGGGATTGTGTTCATTCCAGGAAGAGATCAAAATGGAGATTATGTTCCCTTGTATCCTACTAGATACTTCCAAAAGAAGAAACAAGCGAAAACTAAACTTCCCGAAACTTCTATGGTGTCTTCATCTCAAGATGTTGATAAAAATACTAATGGTAAAACAGGAGCCAAATTCATTGTAGTAGACAAATCACCGGAGTTTTCGTACAAAGAACTAGCCAATGCTACAGATAACTTCAGTTTGGCTAACAAAATTGGTCAAGGTGGTTTCGGAGAGGTCTACTATGGAGAGTTGAGAGGCAAGAAAACTGCAATAAAAAAGATGAAGATCCAAGCAACAAGAGAATTTCTTGCTGAACTTAAAGTCTTAACAAGTGTTCATCATTGGAACCTGGTACACTTGATAGGATATTGTGTTGAGGGATCTCTATTCCTTGTGTATGAATACATAGACAATGGAAACTTAAACCAACATCTACATAATTCAGCGAAAGAGCCGATGACATGGTCTATAAGGGTGCAAATTGCTCTTGATGTTGCGAGAGGACTCGAGTATATTCATGATCATTCAGTGCCTGTATATATCCACCGCGACATTAAATCAGATAACATTTTACTAAATCAAAACTTCACTGCAAAGATTGCTGATTTTGGATTAACCAAGCTGACGGATGTTGCAAGTTCGACAGATAAAACTGATCATGTGGCAGGCACATTTGGTTACATGCCACCTGAAAATGTATACGGACGTATTTCTCGCAAGATAGATGTATATGCTTTTGGAGTTGTTCTTTATGAACTAATTTCTGCTAAAACAGCTGTGATAAAAATTGATAAAACCGAGTTCGAGTTTAAGACCAATGAATCTATTGATGAATACAAGAGCCTTGTAGCTTTGTTTGATGAAGTTATTGATCAAGAGGGAGATCCTATAGAAGAAGGTCTAAGAAAAATGGTGGATCCAAGGCTAGGAGATAACTATTCAATTGATTCCATCAACAAGATGACACAACTTGCCAAGGCTTGCATTAACCGAGACCCGAAACAACGTCCAACAATGAGATCTGTTGTGGTTTCTCTTATGACACTAAATTCAACAATTAATGATGGTACAGACAGTACATCATCGAGTCTTGCTATGGAGCATGACTCAAATTAA 2700 0.3715 MKVNVTVNCSFGNREVSTDYGLFITYPLYSKGTFESIANDTKLDAELLKRYNFSQGRGSIFITDTNGSYFPFHSNTIGSGAIAGLSVGVLAGILLLSFCVYIKYYLKKKVWKKNLTLDDSKMMNSDQIGTEITDLMVEKSHEFSYIELSIATNKFSMSNKIGEGGFGEVFYAELRGQKAAIKKMKKKASKEFCAELKVLTRVHHLNLVGLIGYCVEGFLFLVYEYIDNGNLSQNLRDLEREPLTWSTRMQIALDSARCLEYIHEHTEHVYIHRDIKSENILLDQSFRAKVADFGLSKLADVDHSTSSNIIAEGTFGYMPPEYACGGVAPSSKIDVYAFGVVLYELISAKGAVIRDGPEVKGLVALFDEVLGHEPDPTDGLKPLVDPRLGDNYSIDSIYKMSQIAKACTMKDPQLRPTKEGDTYDLIANTYYTSLTTVEVLKYFNSYDPNHIPVKAKVNVTVNCSCGNSQISKDYGLFITYPLRASDTLEKIASHSKLDEGLVKSFNYGVNFSKGSGIVFIPGRDQNGDYVPLYPTRYFQKKKQAKTKLPETSMVSSSQDVDKNTNGKTGAKFIVVDKSPEFSYKELANATDNFSLANKIGQGGFGEVYYGELRGKKTAIKKMKIQATREFLAELKVLTSVHHWNLVHLIGYCVEGSLFLVYEYIDNGNLNQHLHNSAKEPMTWSIRVQIALDVARGLEYIHDHSVPVYIHRDIKSDNILLNQNFTAKIADFGLTKLTDVASSTDKTDHVAGTFGYMPPENVYGRISRKIDVYAFGVVLYELISAKTAVIKIDKTEFEFKTNESIDEYKSLVALFDEVIDQEGDPIEEGLRKMVDPRLGDNYSIDSINKMTQLAKACINRDPKQRPTMRSVVVSLMTLNSTINDGTDSTSSSLAMEHDSN 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04563 899 SMART serkin_6 155 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04563 899 SMART serkin_6 593 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04563 899 ProSitePatterns Serine/Threonine protein kinases active-site signature. 708 720 IPR008271 GO:0004672|GO:0006468
Trre9g04563 899 Gene3D Transferase(Phosphotransferase) domain 1 664 895 - -
Trre9g04563 899 Gene3D Transferase(Phosphotransferase) domain 1 226 427 - -
Trre9g04563 899 ProSitePatterns Protein kinases ATP-binding region signature. 599 621 IPR017441 GO:0005524
Trre9g04563 899 Pfam Protein kinase domain 595 871 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04563 899 FunFam PTI1-like tyrosine-protein kinase 3 226 430 - -
Trre9g04563 899 Gene3D Phosphorylase Kinase; domain 1 126 225 - -
Trre9g04563 899 Gene3D Phosphorylase Kinase; domain 1 564 663 - -
Trre9g04563 899 FunFam LysM receptor kinase 2 572 663 - -
Trre9g04563 899 ProSitePatterns Serine/Threonine protein kinases active-site signature. 270 282 IPR008271 GO:0004672|GO:0006468
Trre9g04563 899 ProSiteProfiles Protein kinase domain profile. 593 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04563 899 Pfam Protein tyrosine and serine/threonine kinase 156 348 IPR001245 GO:0004672|GO:0006468
Trre9g04563 899 ProSiteProfiles Protein kinase domain profile. 155 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04563 899 SUPERFAMILY Protein kinase-like (PK-like) 133 418 IPR011009 -
Trre9g04563 899 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 417 884 IPR044812 GO:0019199|GO:0045087
Trre9g04563 899 Coils Coil 171 191 - -
Trre9g04563 899 FunFam PTI1-like tyrosine-protein kinase 3 664 888 - -
Trre9g04563 899 ProSitePatterns Protein kinases ATP-binding region signature. 161 183 IPR017441 GO:0005524
Trre9g04563 899 SUPERFAMILY Protein kinase-like (PK-like) 571 874 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04563 Trre-Chr9 52947674 52954629 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04563 417 883 Receptor kinase-like Gene Family AT3G21630 51.186 8.61e-171 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre9g04563 Pkinase 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04563 - K13429 tpra:123920651 842.032