Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04562 ATGAAGGTTAATGTTACTGTTAACTGTTCATTTGGGAACAGAGAGGTTTCCACAGATTATGGTTTGTTCATCACATACCCTCTTTATTCTAAGGGAACTTTTGAGTCTATTGCAAACGATACCAAGCTGGATGCTGAGTTGCTGAAGAGGTACAATTTCAGCCAAGGAAGAGGTTCCATTTTTATAACAGACACAAATGGAAGTTATTTTCCCTTTCACTCTAATACAATAGGAAGTGGGGCTATTGCCGGATTATCTGTTGGAGTACTAGCAGGGATTTTACTGTTGTCATTTTGTGTGTATATTAAATATTACCTAAAGAAGAAAGTATGGAAGAAAAATTTGACATTGGATGATTCCAAGATGATGAACTCAGATCAAATCGGTACTGAAATCACAGACCTTATGGTGGAAAAATCACATGAGTTTTCATACATAGAACTTTCCATTGCCACAAATAAGTTCAGCATGTCTAATAAAATTGGTGAAGGTGGTTTTGGAGAAGTCTTTTATGCAGAGCTTAGAGGCCAGAAAGCCGCTATCAAGAAGATGAAGAAGAAAGCTTCCAAAGAATTTTGTGCTGAATTGAAAGTCTTAACTCGTGTTCATCACTTGAACCTAGTAGGTTTGATTGGATATTGTGTTGAAGGTTTTCTCTTCCTTGTCTATGAATACATTGACAATGGAAACTTAAGTCAAAATCTTCGCGATTTAGAAAGAGAACCTTTGACGTGGTCTACAAGGATGCAAATCGCGCTGGATTCAGCTAGATGTCTTGAATATATTCATGAACATACAGAACATGTATATATCCATCGCGACATAAAGTCAGAAAATATTTTATTAGACCAAAGTTTTCGTGCAAAGGTTGCAGATTTTGGATTATCCAAGCTTGCGGATGTTGACCATTCAACTTCATCTAATATAATCGCAGAGGGTACATTCGGTTACATGCCACCAGAATACGCATGTGGTGGTGTCGCCCCTTCCTCGAAAATAGATGTATATGCCTTTGGAGTTGTTCTATATGAACTTATTTCTGCTAAAGGAGCTGTTATCCGTGATGGACCTGAAGTAAAAGGCCTTGTAGCTTTGTTTGATGAAGTGCTTGGTCATGAGCCAGATCCAACAGATGGTCTAAAACCTCTGGTGGATCCTAGACTTGGAGATAACTATTCGATTGATTCAATTTATAAGATGTCACAAATAGCCAAAGCATGTACAATGAAGGATCCACAACTACGTCCAACAAAGGAAGGAGATACTTATGATTTGATTGCAAATACTTATTATACAAGTTTGACAACTGTTGAGGTTTTAAAATACTTCAATAGTTATGATCCAAATCATATACCAGTTAAGGCTAAGGTTAATGTTACTGTCAATTGTTCTTGTGGGAATAGTCAGATTTCAAAAGATTATGGCTTGTTTATTACCTATCCACTAAGGGCTAGTGATACTCTTGAGAAGATTGCAAGTCATTCTAAACTTGATGAAGGGTTGGTTAAGAGTTTCAATTATGGTGTCAATTTTAGCAAAGGGAGTGGGATTGTGTTCATTCCAGGAAGAGATCAAAATGGAGATTATGTTCCCTTGTATCCTACTAGATACTTCCAAAAGAAGAAACAAGCGAAAACTAAACTTCCCGAAACTTCTATGGTGTCTTCATCTCAAGATGGTAACGGAGCCAAATTCATTGTAGTAGACAAATCACCGGAGTTTTCGTACAAAGAACTAGCCAATGCTACAGATAACTTCAGTTTGGCTAACAAAATTGGTCAAGGTGGTTTCGGAGAGGTCTACTATGGAGAGTTGAGAGGCAAGAAAACTGCAATAAAAAAGATGAAGATCCAAGCAACAAGAGAATTTCTTGCTGAACTTAAAGTCTTAACAAGTGTTCATCATTGGAACCTGGTACACTTGATAGGATATTGTGTTGAGGGATCTCTATTCCTTGTGTATGAATACATAGACAATGGAAACTTAAACCAACATCTACATAATTCAGCGAAAGAGCCGATGACATGGTCTATAAGGGTGCAAATTGCTCTTGATGTTGCGAGAGGACTCGAGTATATTCATGATCATTCAGTGCCTGTATATATCCACCGCGACATTAAATCAGATAACATTTTACTAAATCAAAACTTCACTGCAAAGATTGCTGATTTTGGATTAACCAAGCTGACGGATGTTGCAAGTTCGACAGATAAAACTGATCATGTGGCAGGCACATTTGGTTACATGCCACCTGAAAATGTATACGGACGTATTTCTCGCAAGATAGATGTATATGCTTTTGGAGTTGTTCTTTATGAACTAATTTCTGCTAAAACAGCTGTGATAAAAATTGATAAAACCGAGTTCGAGTTTAAGACCAATGAATCTATTGATGAATACAAGAGCCTTGTAGCTTTGTTTGATGAAGTTATTGATCAAGAGGGAGATCCTATAGAAGAAGGTCTAAGAAAAATGGTGGATCCAAGGCTAGGAGATAACTATTCAATTGATTCCATCAACAAGATGACACAACTTGCCAAGGCTTGCATTAACCGAGACCCGAAACAACGTCCAACAATGAGATCTGTTGTGGTTTCTCTTATGACACTAAATTCAACAATTAATGATGGTACAGACAGTACATCATCGAGTCTTGCTATGGAGCATGACTCAAATTAA 2679 0.3733 MKVNVTVNCSFGNREVSTDYGLFITYPLYSKGTFESIANDTKLDAELLKRYNFSQGRGSIFITDTNGSYFPFHSNTIGSGAIAGLSVGVLAGILLLSFCVYIKYYLKKKVWKKNLTLDDSKMMNSDQIGTEITDLMVEKSHEFSYIELSIATNKFSMSNKIGEGGFGEVFYAELRGQKAAIKKMKKKASKEFCAELKVLTRVHHLNLVGLIGYCVEGFLFLVYEYIDNGNLSQNLRDLEREPLTWSTRMQIALDSARCLEYIHEHTEHVYIHRDIKSENILLDQSFRAKVADFGLSKLADVDHSTSSNIIAEGTFGYMPPEYACGGVAPSSKIDVYAFGVVLYELISAKGAVIRDGPEVKGLVALFDEVLGHEPDPTDGLKPLVDPRLGDNYSIDSIYKMSQIAKACTMKDPQLRPTKEGDTYDLIANTYYTSLTTVEVLKYFNSYDPNHIPVKAKVNVTVNCSCGNSQISKDYGLFITYPLRASDTLEKIASHSKLDEGLVKSFNYGVNFSKGSGIVFIPGRDQNGDYVPLYPTRYFQKKKQAKTKLPETSMVSSSQDGNGAKFIVVDKSPEFSYKELANATDNFSLANKIGQGGFGEVYYGELRGKKTAIKKMKIQATREFLAELKVLTSVHHWNLVHLIGYCVEGSLFLVYEYIDNGNLNQHLHNSAKEPMTWSIRVQIALDVARGLEYIHDHSVPVYIHRDIKSDNILLNQNFTAKIADFGLTKLTDVASSTDKTDHVAGTFGYMPPENVYGRISRKIDVYAFGVVLYELISAKTAVIKIDKTEFEFKTNESIDEYKSLVALFDEVIDQEGDPIEEGLRKMVDPRLGDNYSIDSINKMTQLAKACINRDPKQRPTMRSVVVSLMTLNSTINDGTDSTSSSLAMEHDSN 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04562 892 Gene3D Phosphorylase Kinase; domain 1 126 225 - -
Trre9g04562 892 Gene3D Phosphorylase Kinase; domain 1 557 656 - -
Trre9g04562 892 Pfam Protein kinase domain 588 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04562 892 ProSitePatterns Protein kinases ATP-binding region signature. 592 614 IPR017441 GO:0005524
Trre9g04562 892 SMART serkin_6 155 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04562 892 SMART serkin_6 586 869 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04562 892 FunFam PTI1-like tyrosine-protein kinase 3 657 881 - -
Trre9g04562 892 ProSitePatterns Serine/Threonine protein kinases active-site signature. 270 282 IPR008271 GO:0004672|GO:0006468
Trre9g04562 892 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 418 877 IPR044812 GO:0019199|GO:0045087
Trre9g04562 892 FunFam LysM receptor kinase 2 565 656 - -
Trre9g04562 892 FunFam PTI1-like tyrosine-protein kinase 3 226 430 - -
Trre9g04562 892 ProSiteProfiles Protein kinase domain profile. 155 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04562 892 SUPERFAMILY Protein kinase-like (PK-like) 133 418 IPR011009 -
Trre9g04562 892 Coils Coil 171 191 - -
Trre9g04562 892 Pfam Protein tyrosine and serine/threonine kinase 156 348 IPR001245 GO:0004672|GO:0006468
Trre9g04562 892 SUPERFAMILY Protein kinase-like (PK-like) 566 867 IPR011009 -
Trre9g04562 892 ProSiteProfiles Protein kinase domain profile. 586 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04562 892 ProSitePatterns Protein kinases ATP-binding region signature. 161 183 IPR017441 GO:0005524
Trre9g04562 892 ProSitePatterns Serine/Threonine protein kinases active-site signature. 701 713 IPR008271 GO:0004672|GO:0006468
Trre9g04562 892 Gene3D Transferase(Phosphotransferase) domain 1 657 888 - -
Trre9g04562 892 Gene3D Transferase(Phosphotransferase) domain 1 226 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04562 Trre-Chr9 52947674 52954629 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04562 417 876 Receptor kinase-like Gene Family AT3G21630 51.581 1.89e-169 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre9g04562 Pkinase 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04562 - K13429 tpra:123920651 844.728