Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04557 ATGAAATCCAAAGTTGTTTCAAAACCTCAAGATATTATTACCTACAACAGAAACAAATTCTCCAACAGGGTTAATGTTCCCTTCCCTTGTGAATGCATGAATGGAGAGTTTCTTGCTCACAATTTTCTGTACAGGCCAAGACATTATGATACCTATAATTCGATTGCTAATGTGGATTTTAGTAATTTGACCACTGATGAGTGGATGATGAGAGTCAACAATTATTCTCCAATGGATATTCCTGATTTTGCAACTCTTAATGTTATTGTTAACTGTTCTTGTGGGGACAGAGAGGTTTCTAAGGATTATGGTTTGTTCATCACATATCCACTTAGAAGTGAGGACACTTTGGATTCTATTGCAAAGGATACTAAGATTGAGTCTGAGTTGCTGCAGAGGTACAACCCTGGTGTGAATTTCAGCCAAGGGCATGGTCTTGTTTTTATTCCAAGGAAAGATGAAAATGGAGTTTATGTTCCCTTGCCCTCTAGAAACGCAGGTCATTTAGCTAGAAGTTTAGTTACTGCTGGAATATCTATTGGAGGAATATGCATGGTTCTGTTATTATCAATTTGTATATATGTTCGATACTTTCGAAAGAAGAATGGAGAGGAGTCTAATTTGCCTATGGCACATTCAACTAAAGATGTTGATAAAGATACCAATGGTAATACGGGATCCAAATTCATTTTGGTGGACAAATCACCGGAATTTTCGTACGAAGAACTTGCCAATGCAACAGATAACTTCAGTTTGGCTAACAAAATTGGTCAAGGTGGTTTTGGCGAGGTCTACTATGGTGAGCTAAAAGGCCAGAAAATTGCCATCAAGAAGATGAAGATGCAAGCAACAAGAGAATTTCTTTCTGAACTGAAAGTCTTAACAAGTGTTCATCACTGGAACCTGGTACACTTGATTGGATATTGTGTTGAGGGATATCTATTCCTTGTCTATGAATACATGGAAAATGGAAACTTAAGCCAGAATCTACATAATACAGCGAAAGAACCGATGACATGGTCTACCAGGTTGCAAATTGCTCTAGATGTAGCAAGAGGCCTCGAGTATATTCATGATCATTCAGTGCGTGTATATATCCACCGCGACATAAAATCAGAAAATATTTTATTAAATGAAAACTTAACTGGCAAGATTGCTGATTTCGGATTAACCAAGCTGACTGATATTGCAAGTTCGACTGATAACACTGATCATGTGGCAGGCACATTTGGTTATATGCCGCCCGAAAATGCATATGGACGTATTTCTCGTAAGATAGATGTATATGCTTTTGGAGTTGTTCTTTACGAACTAATTTCTGCCAAAGCAGCTGTGATCAAGATCGATAAAACCAAGTTAGATTCCAAGAGCCTTGAGATTAAGACCGATGAATCTATTGATGAATACAAAAGCCTTGTAGCTTTGTTTGATGAAGTTATTGACGAAGAAGGAAATCCTATAGAACAAGGACTACGAAAACTGGTCGATCCAAGGCTAGGAGATAACTATTCGATTGATTCGATAATAAAGCTTGCCAAGACTTGCACGAACCGAGATCCGAAACAACGTCCAAGAATGAGAGCTGTTGTGCTTTCTCTTATGAAACTAAATTCTACAATTGATGATGGAAGTATGATAGTTAGTGAAGCATTGAGTCCCACTATGGAGGCAGCATGA 1677 0.3798 MKSKVVSKPQDIITYNRNKFSNRVNVPFPCECMNGEFLAHNFLYRPRHYDTYNSIANVDFSNLTTDEWMMRVNNYSPMDIPDFATLNVIVNCSCGDREVSKDYGLFITYPLRSEDTLDSIAKDTKIESELLQRYNPGVNFSQGHGLVFIPRKDENGVYVPLPSRNAGHLARSLVTAGISIGGICMVLLLSICIYVRYFRKKNGEESNLPMAHSTKDVDKDTNGNTGSKFILVDKSPEFSYEELANATDNFSLANKIGQGGFGEVYYGELKGQKIAIKKMKMQATREFLSELKVLTSVHHWNLVHLIGYCVEGYLFLVYEYMENGNLSQNLHNTAKEPMTWSTRLQIALDVARGLEYIHDHSVRVYIHRDIKSENILLNENLTGKIADFGLTKLTDIASSTDNTDHVAGTFGYMPPENAYGRISRKIDVYAFGVVLYELISAKAAVIKIDKTKLDSKSLEIKTDESIDEYKSLVALFDEVIDEEGNPIEQGLRKLVDPRLGDNYSIDSIIKLAKTCTNRDPKQRPRMRAVVLSLMKLNSTIDDGSMIVSEALSPTMEAA 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04557 558 SMART serkin_6 250 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04557 558 SUPERFAMILY Protein kinase-like (PK-like) 225 533 IPR011009 -
Trre9g04557 558 Pfam Protein tyrosine and serine/threonine kinase 252 446 IPR001245 GO:0004672|GO:0006468
Trre9g04557 558 FunFam PTI1-like tyrosine-protein kinase 3 321 545 - -
Trre9g04557 558 ProSitePatterns Serine/Threonine protein kinases active-site signature. 365 377 IPR008271 GO:0004672|GO:0006468
Trre9g04557 558 Gene3D Phosphorylase Kinase; domain 1 221 320 - -
Trre9g04557 558 FunFam LysM receptor kinase 2 229 320 - -
Trre9g04557 558 Gene3D Transferase(Phosphotransferase) domain 1 321 549 - -
Trre9g04557 558 ProSitePatterns Protein kinases ATP-binding region signature. 256 278 IPR017441 GO:0005524
Trre9g04557 558 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 6 543 IPR044812 GO:0019199|GO:0045087
Trre9g04557 558 ProSiteProfiles Protein kinase domain profile. 250 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04557 Trre-Chr9 52938244 52941315 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04557 12 539 Receptor kinase-like Gene Family AT3G21630 51.455 0.0 556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre9g04557 PK_Tyr_Ser-Thr 6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04557 - K13429 tpra:123920651 728.783