Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04556 ATGAAATCCAAAGTTGTTTCAAAACCTCAAGATATTATTACCTACAACAGAAACAAATTCTCCAACAGGGTTAATGTTCCCTTCCCTTGTGAATGCATGAATGGAGAGTTTCTTGCTCACAATTTTCTGTACAGGCCAAGACATTATGATACCTATAATTCGATTGCTAATGTGGATTTTAGTAATTTGACCACTGATGAGTGGATGATGAGAGTCAACAATTATTCTCCAATGGATATTCCTGATTTTGCAACTCTTAATGTTATTGTTAACTGTTCTTGTGGGGACAGAGAGGTTTCTAAGGATTATGGTTTGTTCATCACATATCCACTTAGAAGTGAGGACACTTTGGATTCTATTGCAAAGGATACTAAGATTGAGTCTGAGTTGCTGCAGAGGTACAACCCTGGTGTGAATTTCAGCCAAGGGCATGGTCTTGTTTTTATTCCAAGGAAAGATGAAAATGGAGTTTATGTTCCCTTGCCCTCTAGAAACGCAGGTCATTTAGCTAGAAGTTTAGTTACTGCTGGAATATCTATTGGAGGAATATGCATGGTTCTGTTATTATCAATTTGTATATATGTTCGATACTTTCGAAAGAAGAATGGAGAGGAGTCTAATTTGCCTATGGCACATTCAACTAAAGATGTTGATAAAGATACCAATGGTAATACGGGATCCAAATTCATTTTGGTGGACAAATCACCGGAATTTTCGTACGAAGAACTTGCCAATGCAACAGATAACTTCAGTTTGGCTAACAAAATTGGTCAAGGTGGTTTTGGCGAGGTCTACTATGGTGAGCTAAAAGGCCAGAAAATTGCCATCAAGAAGATGAAGATGCAAGCAACAAGAGAATTTCTTTCTGAACTGAAAGTCTTAACAAGTGTTCATCACTGGAACCTGGTACACTTGATTGGATATTGTGTTGAGGGATATCTATTCCTTGTCTATGAATACATGGAAAATGGAAACTTAAGCCAGAATCTACATAATACAGCGAAAGAACCGATGACATGGTCTACCAGGTTGCAAATTGCTCTAGATGTAGCAAGAGGCCTCGAGTATATTCATGATCATTCAGTGCGTGTATATATCCACCGCGACATAAAATCAGAAAATATTTTATTAAATGAAAACTTAACTGGCAAGATTGCTGATTTCGGATTAACCAAGCTGACTGATATTGCAAGTTCGACTGATAACACTGATCATGTGGCAGGCACATTTGGTTATATGCCGCCCGAAAATGCATATGGACGTATTTCTCGTAAGATAGATGTATATGCTTTTGGAGTTGTTCTTTACGAACTAATTTCTGCCAAAGCAGCTGTGATCAAGATCGATAAAACCAAGTTAGATTCCAAGAGCCTTGAGATTAAGACCGATGAATCTATTGATGAATACAAAAGCCTTGTAGCTTTGTTTGATGAAGTTATTGACGAAGAAGGAAATCCTATAGAACAAGGACTACGAAAACTGGTCGATCCAAGGCTAGGAGATAACTATTCGATTGATTCGATAATAAAGATGACACAGCTTGCCAAGACTTGCACGAACCGAGATCCGAAACAACGTCCAAGAATGAGAGCTGTTGTGCTTTCTCTTATGAAACTAAATTCTACAATTGATGATGGAAGTATGATAGTTAGTGAAGCATTGAGTCCCACTATGGAGGCAGCATGA 1686 0.3802 MKSKVVSKPQDIITYNRNKFSNRVNVPFPCECMNGEFLAHNFLYRPRHYDTYNSIANVDFSNLTTDEWMMRVNNYSPMDIPDFATLNVIVNCSCGDREVSKDYGLFITYPLRSEDTLDSIAKDTKIESELLQRYNPGVNFSQGHGLVFIPRKDENGVYVPLPSRNAGHLARSLVTAGISIGGICMVLLLSICIYVRYFRKKNGEESNLPMAHSTKDVDKDTNGNTGSKFILVDKSPEFSYEELANATDNFSLANKIGQGGFGEVYYGELKGQKIAIKKMKMQATREFLSELKVLTSVHHWNLVHLIGYCVEGYLFLVYEYMENGNLSQNLHNTAKEPMTWSTRLQIALDVARGLEYIHDHSVRVYIHRDIKSENILLNENLTGKIADFGLTKLTDIASSTDNTDHVAGTFGYMPPENAYGRISRKIDVYAFGVVLYELISAKAAVIKIDKTKLDSKSLEIKTDESIDEYKSLVALFDEVIDEEGNPIEQGLRKLVDPRLGDNYSIDSIIKMTQLAKTCTNRDPKQRPRMRAVVLSLMKLNSTIDDGSMIVSEALSPTMEAA 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04556 561 SMART serkin_6 250 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04556 561 Gene3D Phosphorylase Kinase; domain 1 221 320 - -
Trre9g04556 561 Gene3D Transferase(Phosphotransferase) domain 1 321 552 - -
Trre9g04556 561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 365 377 IPR008271 GO:0004672|GO:0006468
Trre9g04556 561 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 6 546 IPR044812 GO:0019199|GO:0045087
Trre9g04556 561 FunFam LysM receptor kinase 2 229 320 - -
Trre9g04556 561 SUPERFAMILY Protein kinase-like (PK-like) 225 536 IPR011009 -
Trre9g04556 561 FunFam PTI1-like tyrosine-protein kinase 3 321 548 - -
Trre9g04556 561 ProSiteProfiles Protein kinase domain profile. 250 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04556 561 ProSitePatterns Protein kinases ATP-binding region signature. 256 278 IPR017441 GO:0005524
Trre9g04556 561 Pfam Protein tyrosine and serine/threonine kinase 252 445 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04556 Trre-Chr9 52938244 52941315 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04556 12 542 Receptor kinase-like Gene Family AT3G21630 51.636 0.0 564
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre9g04556 PK_Tyr_Ser-Thr 6.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04556 - K13429 tpra:123920651 736.487