Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04554 ATGCACGGGTCGGTGTCTAGTTTCCCTAAATCTAGGGTTTTCGCCACAATCTCCACCGGATCTCAACCTTCTATCCATGAAGCTTCTTTAGCTGATTATAAAGTTTCCAATGCATTCCTCTTCCCCGGCCAGGGTGCACAAGCTGTTGGAATGGGAAAAGAAGCTCAGAATGTTCCTTCTGCTGCTGTTTTGTACAAGAAGGCTAATGAGATATTAGGGTTTGATCTTCTTGATGTATGCATTAATGGGCCAAAGGAAAAGCTGAATTCAACAGTTATCAGTCAGATGGTAGATAAAGCAAACGAAAGAGCTTCCAAGAATCATAAATCAAAACGTTTCAAAAGCACAAATCCACATATGTCATCTCATGATGCAACTCCTCACATGACATCTGATGATGTACCTCCTCATATGACTCCTCATGATGAACTTCCTCCCATGGTACCTCTTCATAGGACATCTAATGCTACCCATCCTCTTAAGAAACCCCCTTCAAACATGTCTCGTGTTCCACCTCTTTTTAGGACATCTAATACTAAGACATCTAGTGCTACACCTCATACTACGACATCAGCTACTAGGACGTCTAATGGCCCACATACTCATGCTGCAACACATACTACGACATCAACTACTAGGACGTCTAATGGCCCACATACTCATGCTGCAACTCATACTACGACATCAGCTACTAGGAAGTCTAATGGCACACATAATCATCCTGCAAATCATACTACGACATCAGCTACTAGGAAGTCTAATGGCGCACATAATCATGCTGCAACTCATACTACATCTAATGTCCCACCTCCTCATGATGTTCCTCATGCTGCATCTCCTACTAGGACATCTAATGTCCCACTTCCTCATGATGTTCCTCATGCTGCATCTGCTACTAGGACATCTAATGTGACACATCCATCTTCAAGGGTAGCATCACCATCTAATTCACAACCTTATGATTCTGATGGAGCACAAACCCAAAGATTAAGTGAAAATGTCGTTCCATCTGAGGCACAAAGTCGTGGCAGGAAGCAAACTTTATTCCTTGACTTAGATGGATTTTTGCCTTCGTATGATGCAGCTAATGCGATTGGAGATATGATGAGGAGTAATTATACTGAGCCATGGATCTCATGGAAACAGATACCCACTGAGACAAGGGACTTGTGGTTTGGAGAATTGAAGAAAAAGTTTAAGTTTTGTCCACCGGATGATGCGTGGGCTAGAAACAACTTTGAAACACGAGGTGCAGCAATAATGAAAAATAACTTATGCAAGGCTCGTCTCACAAAGAAAAGACCAAGTTGGATTGATTCGGATGTGTGGAATGCATTAGATGAGAAATGGAAAAATCCAGAATATAAAAAGAAGTGCATGCAGGCGAAAACAAATAGAGCATCTGACCGTGATGGTTTTGGAAAGCCCCTTCACACTTGTGGCTCTATCACCACATCACAACATAGAGCTAATTTGACGGAAGAGAATGGCACTCCCCCCGCTCCTTCAGATTTGTTTCTTCACACACACCAACATCGCAAGAATAAGACTTGGGTTGATCGAAAATCAGAACATGTCTATGGAAAGTATAAACATAGATGGGAAGAATTAACTCAACAAGCATCTTTAGAAGGAACTCAGCCACCAAATGACATAGATGTGTGGACTGAGGTTGCAGGAATAAGGAAAGGACATATATATGGTCTTGGGAGTGAATCGTCTTCATTTGTAGGCCGGCGAAATTATCGTGGTTCAAGCTCCGTTTCAACTGAATGGGTGCAAAGACATGAATTTGAAGAACTGAAACTTGAAAGGGAAGAAATGAGAATTGAAAGGGAAGAAATGAGAAAGGAAAGGGACGAACTACGTGGTATGGTAAAACAATTGATGAAAAAATTTAACTTTCGGCCCAAGTCATATACTAGAGATCAAGTTCATGAAGATGATGTGGTTGATGATAATGATGATATGGTTGATGATAATGAGGATGTGGCTAATGATAATGATGATATGGTTGATGATAATGAGGATGTGGCTAATGATAATGATGATATGTCTGATGATGATAATGTCGTGTTTGATGATGAAGACTTAGAGCAAGAATGGCAAATATATCAGATTTCAAAAGATTATGGCTTGTTTATTACCTATCCACTAAGGGCTAGTGATTCTCTTGAGAAGATTGCAAGTCATTCTAAACTTGATGAAGGGTTGATTAATAGTTTCAATTATGGTGTCAATTTTAGCAAAGGGAGTGGGATTGTGTTCATTCCAGGAAGAGATCAAAATGGAAGCTATATGCCCCTTCGCTCGAGCACAATAGGAGTTGTGGCTATTGTTGGAATATCTGTTGGAGTACTAGCAGGACTTTTATTATTGTCAATTTGTGTTTATATTAAATATTACCTAAAGAAAAAGGCATGGCAGAAGAAAAATTTGATCTTGGATGAACCAAACATGATCTCAGATCAAACCGGTACTCACATCACAGGCATTATAGTGGAAAACTCACTAGAGTTTTCATATGAAGAATTATGTGTTGCTACAAATAACTTCAGTGTCGATAACAAAATTGGTGAAGGTGGTTTTGGAGAAGTCTTCTATGCCGAGCTGCGAGGACAGATAGCCGCTGTCAAGAAAATGAAGATGAAAGCATCCAAAGAATTTTATGCTGAATTGAAAATCTTATCTCGTGTTCATCACTTGAACCTGGTAGGGTTGATTGGATATTGTGTTGAAGGTTGTCTCTTCCTTGTCTATGAATACATTGACAATGGAAACTTAAGTCAAAATCTTCGCGATTTAGAAAGAGAACCTTTGCCATGGTCTACAAGGATGCAAATCGCTCTTGATTCAGCCCGAGGTCTTGAATATATTCACGAGCATACCGTGCGTGTGTATATCCATCGTGACATAAAGTCAGAAAATATTTTATTAGACAGAAACTTTCGTGCAAAGGTTGCAGATTTTGGATTATCCAAGCTTGCTGAAGTTGAAAATTCAACTTCATCGGCTATAGTTGCAGAGGGTACATTCGGCTACATGCCACCCGAATATGCGCATGGTGTTATCGCTCTTTCTCCTAAAATAGATGTCTATGCATTTGGAGTTGTTCTATATGAACTAATTTCTGCTAATCCAGCTGTAATCAATGATGGTCCTGAAGTAAAAGGCCTTGTAGCTATGTTTGGTGAAGTGCTTGATCAAGAACCGAATCCGACAGAAGGTCTAAAAAATCTGGTGGATCCTAGACTTGGAGATAACTACTCAATTGATTCAGTTTACAATATAGCAAAACTAGCCAAAGCATGTACAATGAAGGATCCACAATTACGTCCAAGCATGAGATCCGTCGTCGTTGCTCTTATGACACTAACTTCTACCACTGAGGATTGGAATGTTTCATCTTTTTTTGAAAATCCAGCTTTTGTAAATTTAATGTCTGGAAAATAG 3453 0.3976 MHGSVSSFPKSRVFATISTGSQPSIHEASLADYKVSNAFLFPGQGAQAVGMGKEAQNVPSAAVLYKKANEILGFDLLDVCINGPKEKLNSTVISQMVDKANERASKNHKSKRFKSTNPHMSSHDATPHMTSDDVPPHMTPHDELPPMVPLHRTSNATHPLKKPPSNMSRVPPLFRTSNTKTSSATPHTTTSATRTSNGPHTHAATHTTTSTTRTSNGPHTHAATHTTTSATRKSNGTHNHPANHTTTSATRKSNGAHNHAATHTTSNVPPPHDVPHAASPTRTSNVPLPHDVPHAASATRTSNVTHPSSRVASPSNSQPYDSDGAQTQRLSENVVPSEAQSRGRKQTLFLDLDGFLPSYDAANAIGDMMRSNYTEPWISWKQIPTETRDLWFGELKKKFKFCPPDDAWARNNFETRGAAIMKNNLCKARLTKKRPSWIDSDVWNALDEKWKNPEYKKKCMQAKTNRASDRDGFGKPLHTCGSITTSQHRANLTEENGTPPAPSDLFLHTHQHRKNKTWVDRKSEHVYGKYKHRWEELTQQASLEGTQPPNDIDVWTEVAGIRKGHIYGLGSESSSFVGRRNYRGSSSVSTEWVQRHEFEELKLEREEMRIEREEMRKERDELRGMVKQLMKKFNFRPKSYTRDQVHEDDVVDDNDDMVDDNEDVANDNDDMVDDNEDVANDNDDMSDDDNVVFDDEDLEQEWQIYQISKDYGLFITYPLRASDSLEKIASHSKLDEGLINSFNYGVNFSKGSGIVFIPGRDQNGSYMPLRSSTIGVVAIVGISVGVLAGLLLLSICVYIKYYLKKKAWQKKNLILDEPNMISDQTGTHITGIIVENSLEFSYEELCVATNNFSVDNKIGEGGFGEVFYAELRGQIAAVKKMKMKASKEFYAELKILSRVHHLNLVGLIGYCVEGCLFLVYEYIDNGNLSQNLRDLEREPLPWSTRMQIALDSARGLEYIHEHTVRVYIHRDIKSENILLDRNFRAKVADFGLSKLAEVENSTSSAIVAEGTFGYMPPEYAHGVIALSPKIDVYAFGVVLYELISANPAVINDGPEVKGLVAMFGEVLDQEPNPTEGLKNLVDPRLGDNYSIDSVYNIAKLAKACTMKDPQLRPSMRSVVVALMTLTSTTEDWNVSSFFENPAFVNLMSGK 1150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04554 1150 Pfam Plant transposase (Ptta/En/Spm family) 439 572 IPR004252 -
Trre9g04554 1150 Coils Coil 868 888 - -
Trre9g04554 1150 FunFam PTI1-like tyrosine-protein kinase 3 923 1136 - -
Trre9g04554 1150 FunFam LysM receptor kinase 2 831 922 - -
Trre9g04554 1150 SUPERFAMILY FabD/lysophospholipase-like 38 95 IPR016035 -
Trre9g04554 1150 Gene3D - 35 103 IPR001227 GO:0016740
Trre9g04554 1150 ProSitePatterns Serine/Threonine protein kinases active-site signature. 967 979 IPR008271 GO:0004672|GO:0006468
Trre9g04554 1150 MobiDBLite consensus disorder prediction 649 688 - -
Trre9g04554 1150 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 706 1135 IPR044812 GO:0019199|GO:0045087
Trre9g04554 1150 Pfam Protein tyrosine and serine/threonine kinase 854 1120 IPR001245 GO:0004672|GO:0006468
Trre9g04554 1150 Coils Coil 596 632 - -
Trre9g04554 1150 Gene3D Phosphorylase Kinase; domain 1 824 922 - -
Trre9g04554 1150 Gene3D Transferase(Phosphotransferase) domain 1 923 1139 - -
Trre9g04554 1150 ProSitePatterns Protein kinases ATP-binding region signature. 858 880 IPR017441 GO:0005524
Trre9g04554 1150 MobiDBLite consensus disorder prediction 170 269 - -
Trre9g04554 1150 SUPERFAMILY Protein kinase-like (PK-like) 829 1122 IPR011009 -
Trre9g04554 1150 MobiDBLite consensus disorder prediction 101 342 - -
Trre9g04554 1150 ProSiteProfiles Protein kinase domain profile. 852 1138 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04554 1150 SMART serkin_6 852 1124 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04554 1150 MobiDBLite consensus disorder prediction 296 342 - -
Trre9g04554 1150 MobiDBLite consensus disorder prediction 644 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04554 Trre-Chr9 52911750 52923046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04554 707 1150 Receptor kinase-like Gene Family AT3G21630 54.526 7.52e-159 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre9g04554 PK_Tyr_Ser-Thr 3.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04554 - K13429 tpra:123913621 539.65