Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04553 ATGATGAAACCAATCAAATTCAGATTATTACTTCTATTCTTGTTACTGGCCTTTAAGTTCTTTACTGCAGAATCATTTTGTAGCAAAACTTGTGACATAGCTTTAGCTTCCTATTATATACAGGAAGAAATCTTGTCATATATTTCACCCATCAGAAACACATTTGAAGATTTACATGTGAATATTCCTTTCCCTTGTGATTGCATCAATGGTGAGTTTCTTGGTCACACTTTTCTATACGAGCTTCAGGTCGCAGATGTCATTAATTCCATGGCTGAGTTAACTTTGATCAGTTTGACCACTGAGGATTCGTTTGATGAGTGGGTGGAGAGAAACAACATTAATGCTACTGTTAACTGTTCCTCTGGGGTTTCTAAGGGTTATGGTTTGTTCATCACATATACACTTAGGAGCAAGTATACTTTGGAGTCTATTCCTAAATTTATGAAGGTTAATGTTACTGTTAACTGTTCCTTTGGGAACAGAGAGGTTTCCACAGATTATGGTTTGTTCATCACATACCCTCTTTATTCTAAGGGAACTTTTGAGTCTATTGCAAACGATACCAAGCTGGATGCTGAGTTGCTGAAGAGGTACAATTTCAGCCAAGGAAGAGGTTCCATTTTTATAACAGACACAAATGGAAGTTATTTTCCCTTTCACTCTAATACAATAGGAAGTGGGGCTATTGCCGGATTATCTGTTGGAGTACTAGCAGGGATTTTACTGTTGTCATTTTGTGTGTATATTAAATATTACCTAAAGAAGAAAGTATGGAAGAAAAATTTGACATTGGATGATTCCAAGATGATGAACTCAGATCAAATCGGTACTGAAATCACAGACCTTATGGTGGAAAAATCACATGAGTTTTCATACATAGAACTTTCCATTGCCACAAATAAGTTCAGCATGTCTAATAAAATTGGTGAAGGTGGTTTTGGAGAAGTCTTTTATGCAGAGCTTAGAGGCCAGAAAGCCGCTATCAAGAAGATGAAGAAGAAAGCTTCCAAAGAATTTTGTGCTGAATTGAAAGTCTTAACTCGTGTTCATCACTTGAACCTAGTAGGTTTGATTGGATATTGTGTTGAAGGTTTTCTCTTCCTTGTCTATGAATACATTGACAATGGAAACTTAAGTCAAAATCTTCGCGATTTAGAAAGAGAACCTTTGACGTGGTCTACAAGGATGCAAATCGCGCTGGATTCAGCTAGATGTCTTGAATATATTCATGAACATACAGAACATGTATATATCCATCGCGACATAAAGTCAGAAAATATTTTATTAGACCAAAGTTTTCGTGCAAAGGTTGCAGATTTTGGATTATCCAAGCTTGCGGATGTTGACCATTCAACTTCATCTAATATAATCGCAGAGGGTACATTCGGTTACATGCCACCAGAATACGCATGTGGTGGTGTCGCCCCTTCCTCGAAAATAGATGTATATGCCTTTGGAGTTGTTCTATATGAACTTATTTCTGCTAAAGGAGCTGTTATCCGTGATGGACCTGAAGTAAAAGGCCTTGTAGCTTTGTTTGATGAAGTGCTTGGTCATGAGCCAGATCCAACAGATGGTCTAAAACCTCTGGTGGATCCTAGACTTGGAGATAACTATTCGATTGATTCAATTTATAAGATGTCACAAATAGCCAAAGCATGTACAATGAAGGATCCACAACTACGTCCAAGTATGAGATCTATTGTGGTTGCTCTTATGACACTAACTTCTACCTACTGA 1743 0.3741 MMKPIKFRLLLLFLLLAFKFFTAESFCSKTCDIALASYYIQEEILSYISPIRNTFEDLHVNIPFPCDCINGEFLGHTFLYELQVADVINSMAELTLISLTTEDSFDEWVERNNINATVNCSSGVSKGYGLFITYTLRSKYTLESIPKFMKVNVTVNCSFGNREVSTDYGLFITYPLYSKGTFESIANDTKLDAELLKRYNFSQGRGSIFITDTNGSYFPFHSNTIGSGAIAGLSVGVLAGILLLSFCVYIKYYLKKKVWKKNLTLDDSKMMNSDQIGTEITDLMVEKSHEFSYIELSIATNKFSMSNKIGEGGFGEVFYAELRGQKAAIKKMKKKASKEFCAELKVLTRVHHLNLVGLIGYCVEGFLFLVYEYIDNGNLSQNLRDLEREPLTWSTRMQIALDSARCLEYIHEHTEHVYIHRDIKSENILLDQSFRAKVADFGLSKLADVDHSTSSNIIAEGTFGYMPPEYACGGVAPSSKIDVYAFGVVLYELISAKGAVIRDGPEVKGLVALFDEVLGHEPDPTDGLKPLVDPRLGDNYSIDSIYKMSQIAKACTMKDPQLRPSMRSIVVALMTLTSTY 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04553 580 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524
Trre9g04553 580 SUPERFAMILY Protein kinase-like (PK-like) 281 573 IPR011009 -
Trre9g04553 580 Gene3D Phosphorylase Kinase; domain 1 274 373 - -
Trre9g04553 580 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 8 146 IPR044812 GO:0019199|GO:0045087
Trre9g04553 580 ProSiteProfiles Protein kinase domain profile. 303 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04553 580 Coils Coil 319 339 - -
Trre9g04553 580 SMART serkin_6 303 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04553 580 FunFam LysM receptor kinase 2 282 373 - -
Trre9g04553 580 Pfam Protein tyrosine and serine/threonine kinase 304 496 IPR001245 GO:0004672|GO:0006468
Trre9g04553 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Trre9g04553 580 Gene3D Transferase(Phosphotransferase) domain 1 374 580 - -
Trre9g04553 580 FunFam PTI1-like tyrosine-protein kinase 3 374 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04553 Trre-Chr9 52901668 52904766 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04553 5 579 Receptor kinase-like Gene Family AT3G21630 46.497 2.14e-172 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre9g04553 PK_Tyr_Ser-Thr 2.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04553 - K13429 mtr:11432279 586.645