Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04552 ATGTTTGTGAAGGTTAATGTTACTGTTAATTGTTCCTGTGGGAACAGAAAGGTTTCTAAGGATTATGGTTTGTTCATCACATACCCTCTTAGTCCTAAGCACACTTTGGAGTCTATTGCAAAGGATACTAAACTTGATGCTGAGTTGCTGCAGAGGTACAACCCTGGTGTCAATTTCAGCCAAGGTAGTGGTCTTGTTTTTATTCCAGGAAAAGATGAAAATGGAGTTTATGTTCCCATGCACCCTAGAAAAGCAGGTAATTTAGCTTGGGGTTTAGCTGCTGCTGGAATATCGGTTGGAGGAATATGCGTGGTTCTGTTGTTATCAATTTGTATATATGTTAGATATCGACAGGGGTCTAAATTCCCACCAAAAGATTCTATGACACCTTCTATTAAAGATGCTGATAAAGATACCAATGGTGATACTGGATCCAAATATATTTTTGTGGACAAATCACCGGAGTTTTCGTACGAAGAATTAGCTAATGCTACTGATAACTTCAGTTTGGCTAATAAAGTTGGTCAAGGTGGTTTTGGTGAGGTCTACTATGGAGAGCTAAGAGGCCAGAAAATTGCAATCAAGAAGATGAAGATGCAGGCAACAAGAGAATTTCTTTCTGAACTGAAAGTCTTAACAAGTGTTCATCACTGCAACCTGGTACACTTGATAGGATATTGTGTCGAAGGATATCTATTCCTTGTCTATGAATACATGGAAAATGGAAACTTAAGCCAGCATTTACATAATTCAGCAAAAGAACCGATGACACGGTCTACCAGGTTGCAAATTGCTCTAGATGTAGCAAGAGGCCTCGAGTATATTCATGATCATTCAGTGCCTGTATATATCCACCGCGACATAAAATCAGAAAATATTTTATTAAATGAAAACTTAACTGGCAAGATTGCTGATTTCGGATTAACCAAACTGACTGATATTGCAAGTTCAACAGATAACACTGATCATGTGGCAGGCACATTTGGTTATATGCCGCCAGAAAATGCATATGGACGTATTTCTCGTAAGATAGATGTATATGCTTTTGGAGTTGTTCTTTACGAACTAATTTCTGCCAAAGCAGCTGTGATCAAGATCGATAAAACCAAGTTAGATTCCAAGAGCCTTGAGATTAAGACCGATGAATCTATTGATGAATACAAAAGCCTTGTAGCTTTGTTTGATGAAGTTATTGACGAAGAAGGAAATCCTATAGAACAAGGACTACTAAAACTGGTCGATCCAAGGCTAGGAGATAACTATTCGATTGATTCGATAATAAAGATGACACAGCTTGCCAAGACTTGCACGAACCGAGATCCGAAACAACGTCCAAGAATGAGAGCTGTTGTGCTTTCTCTTATGAAACTAAATTCTACAATTGATGATGGAAGTATGATAGTTAGTGAAGCATTGAGTCCCACTATGGAGGCAGCATGA 1440 0.384 MFVKVNVTVNCSCGNRKVSKDYGLFITYPLSPKHTLESIAKDTKLDAELLQRYNPGVNFSQGSGLVFIPGKDENGVYVPMHPRKAGNLAWGLAAAGISVGGICVVLLLSICIYVRYRQGSKFPPKDSMTPSIKDADKDTNGDTGSKYIFVDKSPEFSYEELANATDNFSLANKVGQGGFGEVYYGELRGQKIAIKKMKMQATREFLSELKVLTSVHHCNLVHLIGYCVEGYLFLVYEYMENGNLSQHLHNSAKEPMTRSTRLQIALDVARGLEYIHDHSVPVYIHRDIKSENILLNENLTGKIADFGLTKLTDIASSTDNTDHVAGTFGYMPPENAYGRISRKIDVYAFGVVLYELISAKAAVIKIDKTKLDSKSLEIKTDESIDEYKSLVALFDEVIDEEGNPIEQGLLKLVDPRLGDNYSIDSIIKMTQLAKTCTNRDPKQRPRMRAVVLSLMKLNSTIDDGSMIVSEALSPTMEAA 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04552 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 283 295 IPR008271 GO:0004672|GO:0006468
Trre9g04552 479 FunFam LysM receptor kinase 2 147 238 - -
Trre9g04552 479 ProSitePatterns Protein kinases ATP-binding region signature. 174 196 IPR017441 GO:0005524
Trre9g04552 479 SMART serkin_6 168 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04552 479 Gene3D Transferase(Phosphotransferase) domain 1 239 470 - -
Trre9g04552 479 Pfam Protein tyrosine and serine/threonine kinase 170 364 IPR001245 GO:0004672|GO:0006468
Trre9g04552 479 Gene3D Phosphorylase Kinase; domain 1 139 238 - -
Trre9g04552 479 ProSiteProfiles Protein kinase domain profile. 168 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04552 479 FunFam PTI1-like tyrosine-protein kinase 3 239 466 - -
Trre9g04552 479 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 4 464 IPR044812 GO:0019199|GO:0045087
Trre9g04552 479 SUPERFAMILY Protein kinase-like (PK-like) 143 454 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04552 Trre-Chr9 52889716 52900535 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04552 5 460 Receptor kinase-like Gene Family AT3G21630 52.442 5.99e-171 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre9g04552 PK_Tyr_Ser-Thr 6.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04552 - K13429 tpra:123920651 672.544