Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g04551 ATGCAATCAAATCTTGTTACAAAACCAGAAGATATTGTCAGCTACAACACAGACACAATAAAAAGCAAAGATTCTGTTCAATCTTTTACAAGAGTTAATGTTCCATTTCCTTGTGATTGCATCAATGATGAGTTTCTTGGTCACACATTTCAATACCATGTTGTAAGAGGAGATACATATTTGTCTGTTGCAAACAATAGTTATTCCAATTTAACAACTGCTGAATTGTTGAATAGCTTTAATAGTTATCAATCTAATGATATTCCTGATACTGCAACTCTTAATGTTACTGTTAATTGTTCTTGTGGGAATAGTGATGTTTCTATGGATTATGGTTTGTTTATTACTTACCCTCTTAGAAGTGAAGATTCTTTGCAATTGATTTCAAATAAGACTCAAATTGATGCTGAGTTGCTTCAAAAGTATAATCCTGGTGTCAATTTTAGTCAAGGGAGTGGTTTGGTTTATATTCCTGGAAAAGACCAAAATGGTAACTATGTTACTTTTCACACAAGCACTGAAGGCCTATCAGGTGGAGTTATCGCTGGAATATCTATTGGAGCAGTAATAGGACTATTGCTATTCGCATTTTGTATTACATATTACCGAAAGAAGAAAGTACGGAAGCAAACTTTGCACTCAGAAGAATCCAGCGCGACCTTCGCTCAAGTTAAGAATGATGAAGTCTCTGGTAATGCTACATATGGAACTTCAGACTTTGCGAGTCCTGCTAATATGATCGGCATTAGGGTGGAAAAGTCAGGGGAGTTTTCATATGAAGAACTAGCTAATGCCACAAATAACTTCAATATGGCTAATAAAATCGGTCAAGGTGGTTTCGGTGAAGTATTTTACGCAGAACTGAATGGCGAGAAAGCTGCAATAAAAAAGATGGATATGAAAGCATCAAAAGAATTTCTTGCTGAGCTTAAGGTGTTGACACGCGTTCATCACTTGAACCTGGTACGGTTGATTGGATATTGCGTCGAGGGATCCCTTTTTCTTGTCTATGAATACATTAATAATGGAAACTTAAGCCAACATCTACGCAGTTCAGACGGAGAACCATTGCAATGGTCTACTAGGGCTAACATTGCTCTGGATTCAGCTAGAGGTCTTGAATACATTCATGAACATACCGTGCCTACATATATTCATCGCGACATAAAGTCAGAAAATATTTTATTAGACAAAAACTTCCGTGCTAAGGTTGCAGATTTTGGATTAACTAAGCTGATTGAAGCTGGAACTTCATCAGTTCCAACTGCTAATATGGCAGGAACATTTGGTTACATGCCACCAGAATATGCATATGGTAGTGTTTCTTCCAAAATAGATGTATATGCTTTTGGAGTTGTTCTATTTGAACTAATTTCTGCTAAAAGAGCTATAGTAATGGGTGCTGAATTAAAGGGTCTTGTAGCTTTGTTTGATGAAGTTTTTGATGGTCCAAATCCTATAGAAGGTCTTAAAAAACTGGTGGATCCTAGACTTGGAGAAAACTATTCAATTGATTCAATTTTCAAGATGGCACAAATTGGCAAAGTATGTACTGAGAGTGATCCAAGACAACGTCCAAATATGAGTTCTGTTGTAGTTGCACTTACCACGTTAACTTCAACTACTGAGGATTGGGATATCACTTCTATATATAAAAATTCAAATCTTGTAAATTTAATGTCTGGAAAATAG 1692 0.3605 MQSNLVTKPEDIVSYNTDTIKSKDSVQSFTRVNVPFPCDCINDEFLGHTFQYHVVRGDTYLSVANNSYSNLTTAELLNSFNSYQSNDIPDTATLNVTVNCSCGNSDVSMDYGLFITYPLRSEDSLQLISNKTQIDAELLQKYNPGVNFSQGSGLVYIPGKDQNGNYVTFHTSTEGLSGGVIAGISIGAVIGLLLFAFCITYYRKKKVRKQTLHSEESSATFAQVKNDEVSGNATYGTSDFASPANMIGIRVEKSGEFSYEELANATNNFNMANKIGQGGFGEVFYAELNGEKAAIKKMDMKASKEFLAELKVLTRVHHLNLVRLIGYCVEGSLFLVYEYINNGNLSQHLRSSDGEPLQWSTRANIALDSARGLEYIHEHTVPTYIHRDIKSENILLDKNFRAKVADFGLTKLIEAGTSSVPTANMAGTFGYMPPEYAYGSVSSKIDVYAFGVVLFELISAKRAIVMGAELKGLVALFDEVFDGPNPIEGLKKLVDPRLGENYSIDSIFKMAQIGKVCTESDPRQRPNMSSVVVALTTLTSTTEDWDITSIYKNSNLVNLMSGK 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g04551 563 ProSitePatterns Protein kinases ATP-binding region signature. 275 297 IPR017441 GO:0005524
Trre9g04551 563 FunFam PTI1-like tyrosine-protein kinase 3 340 549 - -
Trre9g04551 563 Pfam Protein tyrosine and serine/threonine kinase 270 533 IPR001245 GO:0004672|GO:0006468
Trre9g04551 563 CDD STKc_IRAK 275 532 - -
Trre9g04551 563 Gene3D Phosphorylase Kinase; domain 1 242 339 - -
Trre9g04551 563 ProSitePatterns Serine/Threonine protein kinases active-site signature. 384 396 IPR008271 GO:0004672|GO:0006468
Trre9g04551 563 ProSiteProfiles Protein kinase domain profile. 269 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04551 563 SMART serkin_6 269 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g04551 563 FunFam LysM receptor kinase 2 248 339 - -
Trre9g04551 563 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 8 549 IPR044812 GO:0019199|GO:0045087
Trre9g04551 563 SUPERFAMILY Protein kinase-like (PK-like) 253 535 IPR011009 -
Trre9g04551 563 Gene3D Transferase(Phosphotransferase) domain 1 340 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g04551 Trre-Chr9 52878924 52882976 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g04551 10 563 Receptor kinase-like Gene Family AT3G21630 56.940 0.0 638
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre9g04551 PK_Tyr_Ser-Thr 3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g04551 - K13429 mtr:11432279 957.207